Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04606 ATGGCATCATTTGCGGGCACTACCCAGAAGTGCACAGCTTGTGACAAGAAAGTGTATTGGGTGGAACAGCTAACTGCTGACAACAAGGTGTACCACAAATCTTGCTTCAGATGTCACCACTGCAAGGGCACCCTCAAGCTTGGTAATTATTGTTCCTTTGAGGGTGTCCTATACTGTAAGCCCCATTTTGATCAACTGTTTAAGATGACTGGCAGCTTGGACAAAAGTTTTGAAGGTATTCCAAGAATTGCCAGAGTTGAAAGATCTGCTGATCAGGTCCAAACCAACAAGGTTTCAAGGTTGTTTTCTGGAACTCAGGAAAAGTGTGTTGGTTGCAAGAAAACAGTGTACCCAATTGAAAAGGTGGGTGTTGATGGGAAATGTTACCACAAGTCTTGTTTCAGATGCACCCATGGAGGTTGTGTAATCAGCCCATCAAATTATGTTGCCCATGAACATCGTCTTTATTGCAGACACCACCATACTCAGCTCTTTAAGCAAAAGGGCAACTTCAGTCAATTAGTCAACCATGAAAATCTCCAACTCATCTCTGAAAGCACCACACAACATCCAAGTAATGGTAGCACAAGTCCAGCTCATAAATCTTCTTAA 612 0.4281 MASFAGTTQKCTACDKKVYWVEQLTADNKVYHKSCFRCHHCKGTLKLGNYCSFEGVLYCKPHFDQLFKMTGSLDKSFEGIPRIARVERSADQVQTNKVSRLFSGTQEKCVGCKKTVYPIEKVGVDGKCYHKSCFRCTHGGCVISPSNYVAHEHRLYCRHHHTQLFKQKGNFSQLVNHENLQLISESTTQHPSNGSTSPAHKSS 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04606 203 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Spst3g04606 203 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Spst3g04606 203 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Spst3g04606 203 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 135 174 - -
Spst3g04606 203 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 101 134 - -
Spst3g04606 203 Gene3D Cysteine Rich Protein 5 75 - -
Spst3g04606 203 Gene3D Cysteine Rich Protein 103 173 - -
Spst3g04606 203 ProSiteProfiles LIM domain profile. 107 167 IPR001781 -
Spst3g04606 203 FunFam LIM domain and actin-binding 1 103 173 - -
Spst3g04606 203 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 36 - -
Spst3g04606 203 PANTHER OS06G0237300 PROTEIN 2 94 - -
Spst3g04606 203 Pfam LIM domain 11 65 IPR001781 -
Spst3g04606 203 Pfam LIM domain 109 164 IPR001781 -
Spst3g04606 203 CDD LIM1_SF3 7 68 - -
Spst3g04606 203 SMART lim_4 10 62 IPR001781 -
Spst3g04606 203 SMART lim_4 108 160 IPR001781 -
Spst3g04606 203 FunFam LIM domain and actin-binding 1 5 75 - -
Spst3g04606 203 CDD LIM2_SF3 109 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04606 Spst-Chr3 97858398 97862077 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Spst3g04606 LIM 3e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04606 K09377 - gmx:100805084 387.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04606 3 97858398 97862077 Spst3g04606 3 97858398 97862077 ECH
Spst3g04606 3 97858398 97862077 Spst9g02257 9 52536179 52538697 PCT