Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04594 ATGCGCAGCATTCATGGTGGTGTGAAGTACTCATATGAGTCATATTCTCAATCTCCTTTCTCAGCATACCAAGCTCCTAACGATGCAAACACTACCAACGAGAAAGATGCAACAACGTCATCATCACTCAGCAGAATCAGTCCACTCATTTTGCTGGTCATTATAGTTCTAGCAGTTATCTTCTTCGTGTATGGACTTGTCCATTTGGTTCTATGGTTTTTCATGAAAACACCAAACCCTTCATCAATCTACAACTCCAACAGGTTCCACGAATCCACGCGCTCACGTGTTCTTCAGAGGCAGCTTCAACAACTCTTCCGGTTGCACGATTCAGGTCTAGACCAAGCCCTCATAGACGCTCTACCCGTTTTCCATTACCAAGACTTGTTGGGTTCGAAGGAACCGTTTGATTGTGCTGTGTGTTTATGCGAGTTCTCCGAGGACGACAAGCTGAGGCTGCTTCCTATGTGCACACACGCGTTTCACATGAACTGTCTTGACACATGGCTTCTCTCGAATTCCACGTGTCCTCTTTGCAGGGCATCTCTCTCCAACTACGTGGAGAATCAGAATCAGAATCCAATGTTGTTTAATGTTGGCATTGGCAATTCAAATTCTTTGGTTCTGCCAAGTGGGTTCAGAGATGAGGAAGAGAACGGATGTTCAGAGAGTGAAAGATCAGTTGGGAAAAGGGTGTTTTCTGTGAGACTTGGAAAATTCAGAAACAATGGGTTGGAGTTAGAGGGTGTAGAGGGAGAAGGGTATGGTAGTTGTAGTTTGAATGAGAGGAGATGCTACTCCATGGGTTCATATCGGTATGTGGTTCGTGATTCGAATCTGCAAGTGGTGTTGTCTGAATCTCATAATGTGTCAGACAATGAAAATGTGGAGGGAAAGATGATAAACGACTCAACCAAAGGTGAGAGCTTCTCTGTTTCCAAGATATGGCTTTGGTCCAAGAAGACCAGATTTCATGATTCTAATGCAGCTTTCCCTTAG 999 0.4434 MRSIHGGVKYSYESYSQSPFSAYQAPNDANTTNEKDATTSSSLSRISPLILLVIIVLAVIFFVYGLVHLVLWFFMKTPNPSSIYNSNRFHESTRSRVLQRQLQQLFRLHDSGLDQALIDALPVFHYQDLLGSKEPFDCAVCLCEFSEDDKLRLLPMCTHAFHMNCLDTWLLSNSTCPLCRASLSNYVENQNQNPMLFNVGIGNSNSLVLPSGFRDEEENGCSESERSVGKRVFSVRLGKFRNNGLELEGVEGEGYGSCSLNERRCYSMGSYRYVVRDSNLQVVLSESHNVSDNENVEGKMINDSTKGESFSVSKIWLWSKKTRFHDSNAAFP 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04594 332 SUPERFAMILY RING/U-box 117 196 - -
Spst3g04594 332 SMART ring_2 138 179 IPR001841 -
Spst3g04594 332 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 41 316 - -
Spst3g04594 332 CDD RING-H2_EL5-like 137 180 - -
Spst3g04594 332 FunFam RING-H2 finger protein ATL46 100 185 - -
Spst3g04594 332 ProSiteProfiles Zinc finger RING-type profile. 138 180 IPR001841 -
Spst3g04594 332 Pfam Ring finger domain 137 180 IPR001841 -
Spst3g04594 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 189 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04594 Spst-Chr3 97743705 97744703 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04594 35 329 C3H Transcription Factor Family AT2G18650 41.228 2.78e-52 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04594 - - gmx:100807741 472.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04594 3 97743705 97744703 Spst3g04594 3 97743705 97744703 ECH
Spst3g04594 3 97743705 97744703 Spst1g00095 1 1550136 1551305 ECH