Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04590 ATGTTTGGTTCCTTGGATCAGTTCCCTGCTTTTCAGGTTAGCGAAGAATTTAAGAATGTGAATCAAGATGCTTCTGTACATGGTAATCTTAGTTGGCTAACCGTTCGCTATCATAACGCGTCCTATGAGCTATGCACTGAAGAAATGCATGAAAGACTAGTTTCTGCTTTTCGTTGGGCCGACTTCATAATTGGAGCTAAGATGGTGGTAAGATCGTGCTCGAATTTGTCTGACTTGGTGTCCGAGGACAGTTTGAATTCCCCTCAAACTCCAGGAGCTCTTCCTCGCACCCTGTCTGTTCCAGGAATTATGTCTGATCTTGATGGCAAACTGAGGGACAATGATGATTCAAATGCTGTATCATCTGAACAAAATCAGAAGATCATTATAGTAGCAAATTTTCTTCCTCTTAAAGCTCAAAAGGATGAAATATCTAGCAAATGGTGCTTCACTTATGATGAAGATTCAATCTTGTTGCCATTAAAGGATGGCCTCTCGTCTAACACTGAGGTTTTTTATGTGGGATCTCTGAAGGTTCATGTTGATGCTAGTGAACAAGAGAATGTTTCTCTTCAGCTACAGGCGAAATTCAACTGCCTGCCTACCTTTATTCCTTCAGACATCCAGAAACAATTTTATGATGGATTTTGCAAGCAACATTTGTGGCCTCTATTCCATTACATGTTGCCCTTCAATCCAGACTGCTACAATCGCTTTGACAAGTCACTGTGGCAAGCTTATGTTTCTGCTAACAAAATATTTGCTGATAAAGTCATGGAGGTTATTAATCCAGAGCTTGATTATATATGGGTTCACGATTATCATCTCATGATTATTGCGACATTTCTACGGAAGCGATACAATTGGATCAAGCTAGGATTTTTTCTCCACTGTCCATTTCCTTCATCTGAAATTTACCGTGCTTTACCTGTCAGAGATGAAATTTTGAAAGCACTGCTTAATGCAGATTTAATTGGTTTTCATACATTTGATTATGCTCGGCATTTTCTTTCTTGCTGCAGCCGAATTCTTGGCTTAAAATATGAATCCAGAAGGGGATACATCAAGCTTGAATACTTTGGCCGCGCAGTATTCATCAAAATCTTGCCTGTGGGGATTCATTTGTGTCGACTTCAATCTGCCTTGAATCACCCTTCTTTTACGTTCCGTGTAAGAGAAGTGTGGGAGAAGTTCAAGGGGCAAAAACTTATTCTTGGAGTTGATGATATGGACATTTTTAAAGGTATCAGCCTAAAGTTATTGGCCATTGAACAACTCTTTCAGCAATATCCTGAATTTCTAGGTGAATTAATACTTGTCCAGATTGTTAATCCACCAAGGAGTACTGGTAAGGCTGTATATGAGGCAAGGAATGAGATGCACATTATTGCCAACAGGATAAATGATAGGTTTGGCTTTGTTGATTATGAACCTATCATCATCATGGATCGTCATGTTCCATTATACGAGAAGGCATCCTACTATGCTTTAGCAGAATGTTGTATTGTGAATGCGGTGCGAGATGGTTTGAATGTGGTTCCTTACGAGTACATTGTCTGCAGGCAGGGGGCTCCTAAAATGGGTGAAGCTTTAGACCTTGCTCCCCCTCCAACAAGTGCGCTTGTTGTTTCTGAGTTTATAGGTTGCTCACCTTCTCTAAGTGGGGCAATCAGGGTAAACCCATGGGATGTTAATGCTGTTGCTGATGCACTAAATTTGGCCATCAGAATGCCCTGTGGAGAGAAACAGTTGCGGCATGAGAAGAACTACCGATACGTTAGCTCTCATGATGTAGCATACTGGGCCAAAAGTTTTGTGCAAGATCTTGAGTATTCGTGCAAGGATCACCACAGTAAAAATTGCTGGGGGATTGGCTTTGGCCTTAATTTCAGAGTTTTGTCCCTTTCTCCTTCTTTCAGGAAGCTTAACAAAGGCCATGCTGTTTCTTCATATGAAAGGGCTAATTGCAGGGCATTATTTTTGGATTATGACGGCACGGTTGTCCCATCCATTGATAATACTCCAAGTCCTGAAATTATAGCTGTTCTAAATAACCTTTGCAGTGACCCTAAGAACACTGTTTTCATAGTAAGTGGTAGGGGGAAAACCACACTGAGTGAATGGTTTGATGAGTGTCAGAATCTCTGTATAGCAGCTGAGCATGGTTATTTTCTAAAATGGAATCAACAGTCAAATTGGGAAATGAATAATACTAGTATAATTTCTTCTTGGAAAGAGATTGTTGAGCCTGTGATGAGAATGTATACTCAGGCAACAGATGGCTCCTATATAGAGACCAAAGAGAGTGGCTTGGTATGGCACTACTATGATGCTGATCCGGATTTTGGAATTTGGCAAGCCAAGCAGCTGTTGGATCACCTGGAATGTTTATTTGCAAACGAACCAATAACTGTAAACAAAGGAAAGCATATTATTGAAGTCAAGTCACAGGGAATTACTAAAGGGTTAGTTGTAGAGAAAATTCTGTCCAGGATGACCATGGAAGGGAAATCGCCAGATTTTGTACTGTGCATAGGGGATGATAGATCTGATGAGGATATGTTTGAGAGCTTGCTGAGTAAAGGTTACAGTCGAACCTCTTCTGCACCAGAAATCTTTGCATGCACTGTGGGTCAAAAACAAAGTAAAGCTAGGTACTTTTTAGATGATACTGAGGATGTAATGAGGCTACTTCGAGCTCTTGGTAACGTTTCAATGTCTAACTCAGCATGGCCCGAAGAAGACTTAGTTTACTATCTGATTTTCAAGGTTGTAGCAAATGGATGTATATGCTGTCTTTTAGCCATACCTTTGATCTTAGCTTCTGAATGTAGAGATGAGAATACATTGTTTGTTTGTGCAGCTTAG 2868 0.4045 MFGSLDQFPAFQVSEEFKNVNQDASVHGNLSWLTVRYHNASYELCTEEMHERLVSAFRWADFIIGAKMVVRSCSNLSDLVSEDSLNSPQTPGALPRTLSVPGIMSDLDGKLRDNDDSNAVSSEQNQKIIIVANFLPLKAQKDEISSKWCFTYDEDSILLPLKDGLSSNTEVFYVGSLKVHVDASEQENVSLQLQAKFNCLPTFIPSDIQKQFYDGFCKQHLWPLFHYMLPFNPDCYNRFDKSLWQAYVSANKIFADKVMEVINPELDYIWVHDYHLMIIATFLRKRYNWIKLGFFLHCPFPSSEIYRALPVRDEILKALLNADLIGFHTFDYARHFLSCCSRILGLKYESRRGYIKLEYFGRAVFIKILPVGIHLCRLQSALNHPSFTFRVREVWEKFKGQKLILGVDDMDIFKGISLKLLAIEQLFQQYPEFLGELILVQIVNPPRSTGKAVYEARNEMHIIANRINDRFGFVDYEPIIIMDRHVPLYEKASYYALAECCIVNAVRDGLNVVPYEYIVCRQGAPKMGEALDLAPPPTSALVVSEFIGCSPSLSGAIRVNPWDVNAVADALNLAIRMPCGEKQLRHEKNYRYVSSHDVAYWAKSFVQDLEYSCKDHHSKNCWGIGFGLNFRVLSLSPSFRKLNKGHAVSSYERANCRALFLDYDGTVVPSIDNTPSPEIIAVLNNLCSDPKNTVFIVSGRGKTTLSEWFDECQNLCIAAEHGYFLKWNQQSNWEMNNTSIISSWKEIVEPVMRMYTQATDGSYIETKESGLVWHYYDADPDFGIWQAKQLLDHLECLFANEPITVNKGKHIIEVKSQGITKGLVVEKILSRMTMEGKSPDFVLCIGDDRSDEDMFESLLSKGYSRTSSAPEIFACTVGQKQSKARYFLDDTEDVMRLLRALGNVSMSNSAWPEEDLVYYLIFKVVANGCICCLLAIPLILASECRDENTLFVCAA 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04590 955 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 784 914 - -
Spst3g04590 955 Gene3D - 737 817 - -
Spst3g04590 955 Pfam Trehalose-phosphatase 660 891 IPR003337 GO:0003824|GO:0005992
Spst3g04590 955 CDD HAD_TPP 658 896 - -
Spst3g04590 955 FunFam Alpha,alpha-trehalose-phosphate synthase 381 594 - -
Spst3g04590 955 Gene3D Glycogen Phosphorylase B; 118 379 - -
Spst3g04590 955 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 98 902 IPR001830 GO:0003824|GO:0005992
Spst3g04590 955 CDD GT20_TPS 127 610 IPR001830 GO:0003824|GO:0005992
Spst3g04590 955 Pfam Glycosyltransferase family 20 127 610 IPR001830 GO:0003824|GO:0005992
Spst3g04590 955 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 127 613 - -
Spst3g04590 955 NCBIfam HAD-IIB family hydrolase 659 857 IPR006379 -
Spst3g04590 955 FunFam Trehalose-6-phosphate synthase 2 738 817 - -
Spst3g04590 955 Gene3D - 659 888 IPR023214 -
Spst3g04590 955 SUPERFAMILY HAD-like 657 902 IPR036412 -
Spst3g04590 955 Gene3D Glycogen Phosphorylase B; 380 594 - -
Spst3g04590 955 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 656 771 - -
Spst3g04590 955 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 120 379 - -
Spst3g04590 955 NCBIfam trehalose-phosphatase 657 901 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04590 Spst-Chr3 97688389 97693787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04590 68 913 Trehalose Biosynthesis Gene Families AT1G23870 63.220 0.0 1145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04590 K16055 - gmx:100808800 1460.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04590 3 97688389 97693787 Spst9g02241 9 51059024 51062088 PCT