Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04584 ATGACTCCAAGGGATCGCCGCATCCTATCATTCCCGGCGGTTCACCCCTGCGATGGCATATCTCCGCCCACACTTCTCGCCTCACTCATCACTCTCTCCCAAACCGTATGCAATTTCCAACCTCGATTCTTCCTCACCCAACGTCACAACGCACGAGAAACGATACGCCAAATTGGCATACTCTTAATTCTCCTTCAAGAAATTCGAGACCGCGCTTTATCAATCCCTAACTCCACCCTCCTCTGCCTCGCAGAACTCCACTTTGCCTTACAAAAGATCCACTTCTTGATGCAAGATTGCACACTCGAAGGCGCGCGCCTATTAATGCTCGCCAAATCGCAACACGTCGCATCCCAGTTCCGCGCCCTCATTCGCGCCGTCGCCACCTCCCTCGACGTTTTGCCTCTTCACCAGTTCGATGTGTGCGCAGAAGTCAGGGAATTGGCGGAGTTAGTTACGAGGCAAGCGAGGAAAGCCAAGTTCGAAGTGGACCCCAGCGACGCTCGTGCGTGCAAAACCCTCCATACTGCTCTGCGCCTGTTCGCGAGGGGAACCGAACCTGACAACAGTTCCATTCAGGGAATCATTGACTACCTCGAAATTAGAACCTGGACGGATTGCAGTAAAGAGATTAATTTCCTAGAAGAAGAAATCAGCTTAGCGTGTCGCGATCGTGACGAGCGAGAGGTTCCGTTGATCAGTAGCTTGGTAGGGTTCTTAAGTTACTGCAGAGGTGTGATTTTCGAAACCATGGAAGACACGAATCAATCCGAAGGGAGATGCAGCACGGAGATGACACCGTTATCTGTATCATTACTAACGTCTGTTAATCCAGAGGATTTCCGCTGCCCGATCTCCCTCGAGTTGATGACCGATCCGGTGACGGTGTCAACGGGTCAAACCTACGACCGAGCCTCCATTCAGAAATGGCTCAAAGCTGGGAACACCACATGTCCCAAAACAGGGGAGAAGCTAACAAACACAGAGTTGGTCCCCAACACAACGCTCAAGAGGCTCATCCAACAGTTCTGCGCCGATAACGGCATTTCACTCAACAACCCATGTAACAGTAACCGCAACATCGGCGCAGTTAGTCCCGCGGCGGCGCACGCCGTGCAATTCCTGGCGTGGTTCCTGACGCGGAGCCTGGCATTCGGAACGCAAGAACAGAAGCGCAAGGCAGCGTATGAGATTCGCGTGCTTGCAAGAACCAGCATTTTCAATAGGGCTTGTTTGATTGAAGTGGGAACAGTGTCTCCTCTACTAGAACTTTTAGCTTCTGCATCTAACGACAAATCCACTCAAGAGAACGCAATATCCGCTCTATTGAAGCTCTCTAAACATCCGAATGGACCAAAAGATATCATTTCCAGTGGTGGCCTAACCGTAATTCTTTCCGTGTTGAAAAATGGAGTTAGCATAGAAGCTCGTCAAGTAGCTGCTGCTATCATGTTTTATCTCTCTTCGGTGAAAGAGCACCGGAAAATAATAGGTGAGAACCCCGAGGTGATTCCGGCTTTGGTGAAGCTAGTTAAGGAAGGAACAACCTGCGGGAGAAAGAACGCTGTGGTTGCGCTTTTCGGGTTGCTTTTACTTCCTAAGAATCACCAAAGGGTGGTCGCTGCAGGTGCGGTTCCTGCGCTGCTTGACATTTTGGCTTCTTCGGATAAGGAGGAGCTGGTTACTGAATCATTGGCGGTTCTTGCAGCGCTGGCTGAGAATGTTGATGGGGCGCGGGCGATATTGAAAGGTTCGGCGTTGGTGTTGATTACGGGTACGCTGCGTTCTGCCACGTCACGCGCGGGAAAAGAGCACTCTGCTTCGATTTTGTTGTCGCTTTGCGTGAATGTTGGGGCGGAGGTGGTGGCGGTTCTGGCGAAGGATCCTTCGGTGATGCCTGCGCTATATTCGCTTGTGACGGGTGGGAGTTGTCACGGTGCGAAGAAAGCGCGGTTCCTTATCAAAGTTATACAAGATTTCCACGAGACTAGAACTTCTGGACTCAAGGGTTCCTCTCCTCCGCAGGAACCAGCGCTTCACGTTTGGTGA 2049 0.5139 MTPRDRRILSFPAVHPCDGISPPTLLASLITLSQTVCNFQPRFFLTQRHNARETIRQIGILLILLQEIRDRALSIPNSTLLCLAELHFALQKIHFLMQDCTLEGARLLMLAKSQHVASQFRALIRAVATSLDVLPLHQFDVCAEVRELAELVTRQARKAKFEVDPSDARACKTLHTALRLFARGTEPDNSSIQGIIDYLEIRTWTDCSKEINFLEEEISLACRDRDEREVPLISSLVGFLSYCRGVIFETMEDTNQSEGRCSTEMTPLSVSLLTSVNPEDFRCPISLELMTDPVTVSTGQTYDRASIQKWLKAGNTTCPKTGEKLTNTELVPNTTLKRLIQQFCADNGISLNNPCNSNRNIGAVSPAAAHAVQFLAWFLTRSLAFGTQEQKRKAAYEIRVLARTSIFNRACLIEVGTVSPLLELLASASNDKSTQENAISALLKLSKHPNGPKDIISSGGLTVILSVLKNGVSIEARQVAAAIMFYLSSVKEHRKIIGENPEVIPALVKLVKEGTTCGRKNAVVALFGLLLLPKNHQRVVAAGAVPALLDILASSDKEELVTESLAVLAALAENVDGARAILKGSALVLITGTLRSATSRAGKEHSASILLSLCVNVGAEVVAVLAKDPSVMPALYSLVTGGSCHGAKKARFLIKVIQDFHETRTSGLKGSSPPQEPALHVW 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04584 682 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 416 460 IPR000225 GO:0005515
Spst3g04584 682 SMART arm_5 448 489 IPR000225 GO:0005515
Spst3g04584 682 SMART arm_5 404 447 IPR000225 GO:0005515
Spst3g04584 682 SMART arm_5 532 573 IPR000225 GO:0005515
Spst3g04584 682 PANTHER U BOX DOMAIN-CONTAINING 63 655 - -
Spst3g04584 682 Pfam U-box domain 278 347 IPR003613 GO:0004842|GO:0016567
Spst3g04584 682 SUPERFAMILY RING/U-box 276 351 - -
Spst3g04584 682 Gene3D - 351 664 IPR011989 -
Spst3g04584 682 Pfam Armadillo/beta-catenin-like repeat 408 446 IPR000225 GO:0005515
Spst3g04584 682 CDD RING-Ubox_PUB 278 330 IPR045210 -
Spst3g04584 682 SMART Ubox_2 280 343 IPR003613 GO:0004842|GO:0016567
Spst3g04584 682 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 350 IPR013083 -
Spst3g04584 682 ProSiteProfiles U-box domain profile. 276 350 IPR003613 GO:0004842|GO:0016567
Spst3g04584 682 FunFam RING-type E3 ubiquitin transferase 353 668 - -
Spst3g04584 682 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 543 586 IPR000225 GO:0005515
Spst3g04584 682 FunFam RING-type E3 ubiquitin transferase 276 351 - -
Spst3g04584 682 SUPERFAMILY ARM repeat 380 650 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04584 Spst-Chr3 97597613 97599661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04584 2 682 U-box Gene Family AT1G60190 40.688 1.50e-173 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04584 - - gmx:100787869 1072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04584 3 97597613 97599661 Spst3g04584 3 97597613 97599661 ECH