Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04579 ATGGCTATCAGAGGCGTGGATTTCAAGTGGTTGGTTCTCTCACAATTGTACGATGGCTTTTTTTTGTCCATGCTCGCCACTAGTGTGTATCCTTTCACTATTCAGTTGCTGGATTTACCTAATTTAGCTGCTGTCGACTACACTACTGTGTTTGTTTTCCGTCTCTTGATGTTTGTTGATAACGGGCTTGCTGCGGGAATGGGTTTGTTAGCCATATCTAAGTTAGCCATATCTAAAATTAGATCAAATGATGTTGAAATTCATTATATACTGGAACTAATTCAATTATGGCCCCCCTTGTATGTTTCTAGAGATTTTGGGTGGCAGCAGAGATATGCTCGTTTCTGTGGAAGAGTAGTTGTCCTTTCAATCCTTGTGTTGCTTCTCTATCCATTTCTGTGGGCTTGGACTGTAATTGGTACCCTGTGGTTCAGCAGTGCAAAGAGCTGTTTGCCTGAAAATGGTCAAAAATGGGGCTTTCTCATTTGGCTACTTTTTAGCTACTGTGGACTCCTTTGCATTGCTTGCATGTCTCTGGGGAAGTGGTTGACACGAAGACAAGCACATCTATTGCGTGCTCAACAGGGTATCCCTGTATCTGAATATGGGGTTGTGGTTGACATGGTCCGAGTGCCTGATTGGGCATTTGAAGCTGCTGGTCAAGAAACAAGGGGCATGGGACAAGATGCTGCTGCATATCATCCAGGACTTTACCTAACTCCAGCTCAGAGAGAAGCAGTTGAAGCTTTAATTCAGGAACTCCCAAAGTTCAGGTTAAAGGCTGTTCCTACTGATTGCAGTGAATGTCCCATCTGCTTAGAAGAGTTCTATGTAGGGAATGAGGTTCGAGGCCTCCCTTGTGCTCACAATTTTCATGTTGAATGCATCGATGAGTGGCTTAGGTTGAATGTGAAATGTCCTCGGTGCCGGTGCTCAGTATTCCCAAACCTTGATCTTAGTGCCCTGTCCAATCTCCGTGCTGAGCCTGAACGATCTTCTGTCAGTCTTGTGACAACAACCAGATACGTGAGAGGTCAACCATCTAGTCAAAGTTACCGGTTAAGATTGCAGGGTCTTCTTCGTCCTGTCCGTGCTGAAATTGCCGGGCCTGTTGGTGGTGACATGGATAATTCGTTGGAAAATGATGAGAACGATTTTGTATCAATTATGACTCATAATACATCATCCGAAGACCATGTCTCTTCTGTCGAATGCGTGCCTGTTACTGTGAGACATTCCTCTGCACAAAGTTAG 1254 0.445 MAIRGVDFKWLVLSQLYDGFFLSMLATSVYPFTIQLLDLPNLAAVDYTTVFVFRLLMFVDNGLAAGMGLLAISKLAISKIRSNDVEIHYILELIQLWPPLYVSRDFGWQQRYARFCGRVVVLSILVLLLYPFLWAWTVIGTLWFSSAKSCLPENGQKWGFLIWLLFSYCGLLCIACMSLGKWLTRRQAHLLRAQQGIPVSEYGVVVDMVRVPDWAFEAAGQETRGMGQDAAAYHPGLYLTPAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFYVGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRAEPERSSVSLVTTTRYVRGQPSSQSYRLRLQGLLRPVRAEIAGPVGGDMDNSLENDENDFVSIMTHNTSSEDHVSSVECVPVTVRHSSAQS 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04579 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 238 315 IPR013083 -
Spst3g04579 417 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 71 IPR044793 GO:0004842|GO:0010182
Spst3g04579 417 SMART ring_2 269 309 IPR001841 -
Spst3g04579 417 Pfam Ring finger domain 268 310 IPR001841 -
Spst3g04579 417 FunFam E3 ubiquitin-protein ligase SIS3 237 315 - -
Spst3g04579 417 ProSiteProfiles Zinc finger RING-type profile. 269 310 IPR001841 -
Spst3g04579 417 SUPERFAMILY RING/U-box 251 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04579 Spst-Chr3 97542261 97547162 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04579 57 387 C3H Transcription Factor Family AT3G47990 65.569 9.64e-150 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04579 K16284 - gmx:100812016 655.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04579 3 97542261 97547162 Spst3g04579 3 97542261 97547162 ECH