Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04575 ATGGAGTACATGGTAGAAATGCGTGATAGGGGGTGCATGCACATAGCTACAGAATACACTGCATGCCGTAGTGTGTCCTTTTCCCAAAGATTAGTGAAAGAATACGAAGAGAGCCAGTGCTTGAACATGGCAACAACTGAATCTTACGAGTATGAATGTAAGAAGGGGCTCTGGAATACGGAGGAAGACACGGTTCTAATCAATTACGTAAAGAAGCATGGAAAGGGGAAGTGGAGCCGGATTCCTAAAGTAACAGGGTTGAAGAGAAGCGGCAAAAGTTGCAGACTAAGGTGGATGAATTATCTATCTCCTGATGTTAAGCGTGGGGATTTCTCAGAGGAAGAGGAAGACCTTGTAATTCGGCTTCACAATCTCCTTGGAAACAGGTTCTTTCTTATTAGACCAATTCTTATAAAAGTAAATCATGTGTCATATATACGACATGAGACATTTTACATTGGTGATTATTATGGTACTCACAATAAATTAAAGAAGATGGTGCACTTGTTAAGGTGGTCTTTGATTGCGGGGAGGATTCCGGGAAGGACAGACAATCAAGTGAAGAACTTTTGGAACACTCATTTAAGCAAGAAGCTTAGTGACGATAAGAAGAAAAAGAGCAAAGTTTGGGTCACCCCAAAATGTACGCGTACAGTTGAGGCAGATGATAATTGCAATAGTGCATCAAAGGGGACGAGTGACGAAGCTAACAAGCTTGTCCATGAAAATTGTTGGAGTGATGATCTAATGGACTTCTCAAGCATGCATGAGGGGTTTATGACAGATGATATTGGATTGGTAGACGGTACTGGGGATCTGAGTCGGTATTTCAGTTCTATCCTTTTCAGATCCCAACACTATCATGCCAACCATAATGAGCTTCAGCTCTTCTTTTGGACTACAATGGTTCAACATTCAATGATTTACTATATACAGCGCTGGTGCGTACACCACGGAGCGGTGATGCGTGGCTTTATCTTGCAGTCATTAAATGCCAATTCTATCACTAACGAGAGAGCCAGTGCTTGA 1029 0.4198 MEYMVEMRDRGCMHIATEYTACRSVSFSQRLVKEYEESQCLNMATTESYEYECKKGLWNTEEDTVLINYVKKHGKGKWSRIPKVTGLKRSGKSCRLRWMNYLSPDVKRGDFSEEEEDLVIRLHNLLGNRFFLIRPILIKVNHVSYIRHETFYIGDYYGTHNKLKKMVHLLRWSLIAGRIPGRTDNQVKNFWNTHLSKKLSDDKKKKSKVWVTPKCTRTVEADDNCNSASKGTSDEANKLVHENCWSDDLMDFSSMHEGFMTDDIGLVDGTGDLSRYFSSILFRSQHYHANHNELQLFFWTTMVQHSMIYYIQRWCVHHGAVMRGFILQSLNANSITNERASA 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04575 342 ProSiteProfiles Myb-like domain profile. 103 195 IPR001005 -
Spst3g04575 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 171 199 IPR017930 -
Spst3g04575 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 52 106 IPR017930 -
Spst3g04575 342 CDD SANT 58 102 IPR001005 -
Spst3g04575 342 FunFam MYB-related transcription factor 54 107 - -
Spst3g04575 342 Gene3D - 48 107 - -
Spst3g04575 342 CDD SANT 160 194 IPR001005 -
Spst3g04575 342 Gene3D - 110 199 - -
Spst3g04575 342 Pfam Myb-like DNA-binding domain 55 102 IPR001005 -
Spst3g04575 342 Pfam Myb-like DNA-binding domain 160 195 IPR001005 -
Spst3g04575 342 ProSiteProfiles Myb-like domain profile. 50 102 IPR001005 -
Spst3g04575 342 SMART sant 107 197 IPR001005 -
Spst3g04575 342 SMART sant 54 104 IPR001005 -
Spst3g04575 342 SUPERFAMILY Homeodomain-like 57 133 IPR009057 -
Spst3g04575 342 SUPERFAMILY Homeodomain-like 170 201 IPR009057 -
Spst3g04575 342 PANTHER MYB DOMAIN PROTEIN 55 49 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04575 Spst-Chr3 97494616 97502672 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04575 45 199 MYB Transcription Factor Family AT5G40330 52.903 1.80e-49 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst3g04575 Myb_DNA-binding 1.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04575 K09422 - tcc:18603898 172.555