Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04574 ATGGCAACAACTGAATCTTACGAGTATGAACGTAAGAAAGGGCTCTGGAATGCGGAGGAAGACACGGTTCTAATCAATTACGTAAAGAAGCATGGAAAGGGGAAGTGGAACCGGATCCCTAAAGTAACAGGGTTGAAGAGAAGCGGCAAAAGTTGCAGACTAAGGTGGATGAATTATCTAACTCCTGAGGTTAAGCGTGGAGATTTCTCAGAGGAAGAGGAAGACCTTGTAATTCGGCTTCACAATCTCCTTGGAAATAGGTGGTCTTTGATCGCGGGGAGGATCCCGGGAAGGACAGACAATCAAGTGAAGAACTTTTGGAACACTCATTTAAGCAAGAAGCTTGGTGTTCAAAAAAACAAAGTTTGTGTCATCCCAAAATGTATGCCTATAGTTGAAACAGAGGGTAATTGCAATAGTGCATCAAAGGGGACCAGTGGGGAAGGTAACAAGCTTGTCTATGAAAGTTGTTGGAGTGATGATCTAATGGACTTTTCAAGCATGCATGAGGGGTTTATGGCAGATGATTTTGAGAGCACCTTTTCTTTTGCTAACAGTGTTGATCTATGCACTCCTTACTTTGGTGAAGCTTTTCACCATTGTTTCTTCGGTCTTTGA 618 0.4272 MATTESYEYERKKGLWNAEEDTVLINYVKKHGKGKWNRIPKVTGLKRSGKSCRLRWMNYLTPEVKRGDFSEEEEDLVIRLHNLLGNRWSLIAGRIPGRTDNQVKNFWNTHLSKKLGVQKNKVCVIPKCMPIVETEGNCNSASKGTSGEGNKLVYESCWSDDLMDFSSMHEGFMADDFESTFSFANSVDLCTPYFGEAFHHCFFGL 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04574 205 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Spst3g04574 205 FunFam MYB-related transcription factor 12 65 - -
Spst3g04574 205 Gene3D - 68 127 - -
Spst3g04574 205 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 10 133 - -
Spst3g04574 205 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 60 IPR017930 -
Spst3g04574 205 Gene3D - 13 65 - -
Spst3g04574 205 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Spst3g04574 205 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Spst3g04574 205 CDD SANT 69 111 IPR001005 -
Spst3g04574 205 CDD SANT 16 60 IPR001005 -
Spst3g04574 205 Pfam Myb-like DNA-binding domain 66 111 IPR001005 -
Spst3g04574 205 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Spst3g04574 205 SMART sant 65 113 IPR001005 -
Spst3g04574 205 SMART sant 12 62 IPR001005 -
Spst3g04574 205 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04574 Spst-Chr3 97493778 97494613 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04574 3 128 MYB Transcription Factor Family AT5G40330 67.460 1.33e-61 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst3g04574 Myb_DNA-binding 6.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04574 K09422 - zju:107418407 208.764