Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04556 ATGGACATTGAAACAAACCTCACAGAAAACTATGACTCTCAGCCAATCCAGGTGCAAGAAAACTACTTGAAACCCATGGGGGATCAGCTTCCTTTTGGAGCTCCTTCCCCACAGGGTTTCTTGCAAGATTTTCATCATAGTGATGAGTTTCCTGTGAATAATGGCTCCTCATCTAATCCCATTTTCGGGCTACAAACTCCAAATTTTGATCCCTTTGATCATAATATTGTAAACTGTGAATCTGCACCTCCTGATTTTGAAGATTTTGAGTGCAAGCCTTTTGCTGAGAGTAATGGTAGTGCACGTGCTCATCCGATGGACAATTTCCAGTATGTAGGTTATAGTTTAAACCTCCCTCGGACGAATCAACTAGATATGGTGGTGACCAACCAAAGATATCTGCCCTTAACTGTTCTTGAAACCAACCCTTTGAATTATGTTGTACCAGATGAAGTCTCATGCATATCCCCACCAAACTATTGTAAGAGAGTTGGTTTGAATAAAAACCTTAGGGAATCTCCACGAACTAGGAGAACATTCAAAGCTCGGAAGAACTCCAACATAGTGAAGGGACAATGGACATCAGACGAAGACAGATTGTTGATGCAACTGGTCGACCAATATGGAATGAGGAAGTGGTCACATATAGCTCAGGCGTTGCCTGGAAGAATAGGGAAACAATGCAGAGAACGATGGCATAACCATTTAAGGCCAGACATTAAGAAGGACATATGGACCGAAGAAGAAGATAAGATACTGATCCAGGCTCATGCAGAGATAGGAAATAAGTGGGCAGAGATTGCAAAAAAATTACCTGGAAGAACTGAGAACTCCATCAAAAACCATTGGAACGCAACAAAGAGAAGACAATATTCCAAAAGAAAGTGTCGTTCAAAGTACCCTAGATGCTCTCTTCTTCAGGAATATATCAAGAGTTTGAATTTAGACCAAAATCCACCAATAGACTATCGAAAAAAATCTGCTAAAAATGCCAATGCCAGAACAAATAATAACGGCAAAGCAGCAGCTCAGACCCTGTGTGCTGATCAATTCTGTCTCAACGGTCAGTTGGTGCCAAAGTATGATTTTAACGAGGTCCCAGATTTTTGTTTAGATGATAACTTGTTTGAAGAGGGTTGTAGCATTGATTCTCTGCTAGATGATATGCAAAGTGCTTCAACTATGGATGAGAATTTTTTTGATAGAAAAGTGCAATGTGCTCCTACTATGCAGGGAAAGCAATCTCATCAAGGAGGCATCATGCAGTGTGTTCATGTCGTTGATGTTGATGAGCATCACGAGCTCAAGATGATGACACCAATTATGGGAATTGAAGTTAAGAAGGAGCTGGATTTAGTGGAGATGATATCGCACCATGTTAATGAAAGCATTGGTGTATGA 1401 0.4069 MDIETNLTENYDSQPIQVQENYLKPMGDQLPFGAPSPQGFLQDFHHSDEFPVNNGSSSNPIFGLQTPNFDPFDHNIVNCESAPPDFEDFECKPFAESNGSARAHPMDNFQYVGYSLNLPRTNQLDMVVTNQRYLPLTVLETNPLNYVVPDEVSCISPPNYCKRVGLNKNLRESPRTRRTFKARKNSNIVKGQWTSDEDRLLMQLVDQYGMRKWSHIAQALPGRIGKQCRERWHNHLRPDIKKDIWTEEEDKILIQAHAEIGNKWAEIAKKLPGRTENSIKNHWNATKRRQYSKRKCRSKYPRCSLLQEYIKSLNLDQNPPIDYRKKSAKNANARTNNNGKAAAQTLCADQFCLNGQLVPKYDFNEVPDFCLDDNLFEEGCSIDSLLDDMQSASTMDENFFDRKVQCAPTMQGKQSHQGGIMQCVHVVDVDEHHELKMMTPIMGIEVKKELDLVEMISHHVNESIGV 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04556 466 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 185 240 IPR017930 -
Spst3g04556 466 ProSiteProfiles Myb-like domain profile. 185 236 IPR001005 -
Spst3g04556 466 Gene3D - 189 242 - -
Spst3g04556 466 ProSiteProfiles Myb-like domain profile. 237 287 IPR001005 -
Spst3g04556 466 PANTHER MYB PROTEIN-RELATED 171 329 - -
Spst3g04556 466 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 241 291 IPR017930 -
Spst3g04556 466 FunFam Transcription factor MYB119 243 307 - -
Spst3g04556 466 SUPERFAMILY Homeodomain-like 187 283 IPR009057 -
Spst3g04556 466 CDD SANT 245 287 IPR001005 -
Spst3g04556 466 Pfam Myb-like DNA-binding domain 245 284 IPR001005 -
Spst3g04556 466 Pfam Myb-like DNA-binding domain 190 236 IPR001005 -
Spst3g04556 466 Gene3D - 243 308 - -
Spst3g04556 466 SMART sant 189 238 IPR001005 -
Spst3g04556 466 SMART sant 241 289 IPR001005 -
Spst3g04556 466 FunFam Transcriptional activator Myb isoform A 189 242 - -
Spst3g04556 466 CDD SANT 193 236 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04556 Spst-Chr3 97208650 97210360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04556 116 389 MYB Transcription Factor Family AT4G18770 52.465 1.02e-93 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst3g04556 Myb_DNA-binding 6.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04556 K09422 - gmx:100816653 777.319
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04556 3 97208650 97210360 Spst3g04556 3 97208650 97210360 ECH
Spst9g02196 9 48994491 48996137 Spst3g04556 3 97208650 97210360 PCT