Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04549 ATGACAGTATTCACCACAAAATTTCCCAGTTTCTTCAACTCCTTCACAACCATGCCTTCATTCATCATTGCACTCTACATAATACTCTCAGCAGCATATTTAATCCCTCTAAGTTTGTGCCACCCCAACACATGCCGTTCATACTGCGCCAACATAACCATAGACTACCCCTTCGCACTCCAATACGGGTGCGGCCACCCTGGCTTCCGCGACCTCCTTTTCTGCATCAACGACGTTCTCATGTTCCACGTCAGCTCCGGCTCCTACAGGGTCCTCGAAATCGACTACGCCTACCAGGCCCTCACGCTTCACGAGCCTCACATGTCCACCTGCCACAACCTCGTCCTTGGATCCCGAGGCAACGGCTTCGCCCTCGAACCTTGGCGCGCTCCTTACATGAACCCCGCCGCCGACAACGTCTTCATGCTCATCGCCTGCTCTCCTCGCTCCCCCCTCTTCCAGGGCTTCCCCGGAAAACACCTCCCCTGCCGCAACGTCTCCGGCATGGGCTGCGAGGAGTACCTCTCCTGCCCCGCCTGGGAGATGATGGGCCACAAGAGATTGGGCTCCGCCTCCTTCTTTGGGTCCGGCCCACCTGAGTGCTGTGCCGTTCCGTATGAGGCTATTAGGGGCATTAACCTCACCAAGCTTGAGTGTGAAGGGTATAGCAGTGCTTATAGCGTCGCTCCGCTTAAGGTTGATGGACCTGGGGGCTGGTCCTATGGGATCCGTGTGAGGTACTCCGTCCAGGGGAACGACGAGTTCTGTGGCGCGTGTGAGGCCACTGGTGGCACCTGTGGGTATGGTTCCGATGGGATTAGACAGTTGTGTATGTGCGGCGACTTCAATTCCACCTCCAATTGTGATTCAGTTGGCATACCATCAGGAGCAAGGCCTACCTACACAGAGGATAAAATATTAGCAGGTACTGACACCAAAGACTCTTTGACTATTGACGTATGTGCTAGTGTGGATGACGACCAACCAGATTTCAAAAAAAGTGTTCGTACAATGAGAACGAGAGTGAGTTTTGATTTGTATTTCCTATTCCCCGTTGAAAGGCTTGCTCAAACGTTCTTCAAAAAAGCAGGACGCAGTGATCATTTAGTAGAGAATTGCTCATCTATTCAATTTGTAGATAGGGGACTCAGTTCCACCACTAGACAAAAGAAGTTTAAGAGTTATATTCTAAAGAAAAAAAAAATGGTGCACTTTTTGAACGTTCCTGAAAACCTTATTACCTGGCTATGGCTAATGTTGATGTCGTCGTCGTCGTTGTTAATCCCGCGTGCGGGTTGCGTCGGTTCGGGTATACGCCAAACGGGTCTCACGTGCGGGGGTTCTGAGCACCCTGGATCAAGCGCATCTAAGTTCATGGCCATAATGGACACGTTGTCGTTTCAGGTGAAAGATCGAGGGTGGGGAGCGCAGACGCTGCTGGGTACTGGGCCTCCGATGTACGCATTGAGCCAATGCCGGCGCGACCTGAGGCCCACGGACTGCTACACGTGTTTCAGCCAAGCGAGGCAGGTGCTGTCGCGGTGCGTGCCCCAGACAGCTGGCAGAATCCACCTCTACGGCTGCTTCCTCCGCTACGACAACTACTCCTTCTTCCGGGAGAGCGTGGACCCCACTAGCGACATCGGCATCTGCATGGCCCCGATTCTGGGGGATGATGGGGGCAGACGGGTGGCGGCGGTGGTGTCCAACGTGACGAAGGAGGCGGCGGAGCACGGGTTCGCGGTGGACGGAGAGGAGGGGGTTTTCGCTCTGGCTCAGTGCTGGGCGACGCTGAATAAAGGGAGGTGCCGTATATGCTTGAGTGAAGCGGCAAAGAAAGTGCAGGAATGTGTGCCTAATGTTGAGGGTAGGAGTCTATTCACTGGTTGTATTTTGAGGTATTCAACGCGCAAATTCTACAACGATGCTGCAGAAGATAACATCAAGGATTCTAAAGAAGGGCCTGATGTCTGGATGATCGCTGCATGGGTATTATCAGCGATCGTAGGGATTTTACTCATCGTCCTTGTTGTATTTATATGCTGCCAAAGAATATCGTCACGTAGTAAAGTAAGCGACAGTTGTGGTGCGTTACCTGATTTTGCCTTCGTAGCTGGCTTCAGTTTTAGGTACGATTTGCTTGAGAAGGCCACAAATCATTTTGATCCGGCAAACAAATTAGGCGAAGGAGGAGCTGCTTCCGTTTTCAAAGGAACCCTCCCCTCGGGGGGGACTGTTGCTGTTAAACGATTGTTTTTTAATAAACGGCAATGGACAGAGGGGTTCTTCAATGAGGTAAATTTGATTAATGGGATTCAACACAAGAATGTGGTGAAGCTGTTGGGGTGCAGCATTGAAGGTCCTGAAAGCCTGTTGGTTTATGAATTTGTGCCCAATGGAAGTCTTGATCAAGTCCTTTTCGGTAAGGAATCAGAAAATGCTCTGAACTGGGACCAACGGTTTCAAATCATATGTGGGATAGCTGAGGGCCTAGCGTACCTTCATGAAGGCTCTGGAACAAAGATCATTCACAGAGACATAAAGTCGAGCAACATTCTATTTGATGAGAATCTAAATCCAAAAATAGCTGATTTTGGTCTTGCTCGTAGTATTACTGAAAATAAATCTCTTAGGACAGGAAATTCAAGGACACTGGGATATATGGCTCCTGAATATGTTTCAAAAGGACAAGTGACAGAGAAGGCAGATGTCTATGCTTTTGGTGTGTTAGTTGTTGAAATTGTTTGTGGTAAGAAGAACAATGATTACATACCGGGGTCAACTTCACTACTTCACAGCGTGTGGAAGAATTACAAAGCAAATAATATAACAGCATCCGTTGATCCTGCTCTGCACGGTAAACATACAGTAGAAGAAGCATCACATGCGCTCCAAGCTGGCCTTCTTTGTACACAATCATCTCTTGCTCTCAGACCATCCATGTCTGAAGTAGTTCAGATGTTAACCAAGAAAGACTACGCTATTCCCTCCCCAAAGCAACAACCATTCCTCAATTTCAGTGGTCTAAGTCAAAATGACCGCTCTCTATCCTCAAGTTGGCATGATGCAAGTGCAAGGTCCTCCTTCCACAGCACCACCAGTTCACTAATTCCAAATGATGATTTAACAGTACTGGAGAAAACTGAACGAGGCACCTGA 3159 0.4932 MTVFTTKFPSFFNSFTTMPSFIIALYIILSAAYLIPLSLCHPNTCRSYCANITIDYPFALQYGCGHPGFRDLLFCINDVLMFHVSSGSYRVLEIDYAYQALTLHEPHMSTCHNLVLGSRGNGFALEPWRAPYMNPAADNVFMLIACSPRSPLFQGFPGKHLPCRNVSGMGCEEYLSCPAWEMMGHKRLGSASFFGSGPPECCAVPYEAIRGINLTKLECEGYSSAYSVAPLKVDGPGGWSYGIRVRYSVQGNDEFCGACEATGGTCGYGSDGIRQLCMCGDFNSTSNCDSVGIPSGARPTYTEDKILAGTDTKDSLTIDVCASVDDDQPDFKKSVRTMRTRVSFDLYFLFPVERLAQTFFKKAGRSDHLVENCSSIQFVDRGLSSTTRQKKFKSYILKKKKMVHFLNVPENLITWLWLMLMSSSSLLIPRAGCVGSGIRQTGLTCGGSEHPGSSASKFMAIMDTLSFQVKDRGWGAQTLLGTGPPMYALSQCRRDLRPTDCYTCFSQARQVLSRCVPQTAGRIHLYGCFLRYDNYSFFRESVDPTSDIGICMAPILGDDGGRRVAAVVSNVTKEAAEHGFAVDGEEGVFALAQCWATLNKGRCRICLSEAAKKVQECVPNVEGRSLFTGCILRYSTRKFYNDAAEDNIKDSKEGPDVWMIAAWVLSAIVGILLIVLVVFICCQRISSRSKVSDSCGALPDFAFVAGFSFRYDLLEKATNHFDPANKLGEGGAASVFKGTLPSGGTVAVKRLFFNKRQWTEGFFNEVNLINGIQHKNVVKLLGCSIEGPESLLVYEFVPNGSLDQVLFGKESENALNWDQRFQIICGIAEGLAYLHEGSGTKIIHRDIKSSNILFDENLNPKIADFGLARSITENKSLRTGNSRTLGYMAPEYVSKGQVTEKADVYAFGVLVVEIVCGKKNNDYIPGSTSLLHSVWKNYKANNITASVDPALHGKHTVEEASHALQAGLLCTQSSLALRPSMSEVVQMLTKKDYAIPSPKQQPFLNFSGLSQNDRSLSSSWHDASARSSFHSTTSSLIPNDDLTVLEKTERGT 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04549 1052 Pfam Wall-associated receptor kinase galacturonan-binding 45 103 IPR025287 GO:0030247
Spst3g04549 1052 ProSitePatterns Serine/Threonine protein kinases active-site signature. 842 854 IPR008271 GO:0004672|GO:0006468
Spst3g04549 1052 FunFam Cysteine-rich receptor-like protein kinase 2 797 996 - -
Spst3g04549 1052 Pfam Protein tyrosine and serine/threonine kinase 725 988 IPR001245 GO:0004672|GO:0006468
Spst3g04549 1052 Gene3D Transferase(Phosphotransferase) domain 1 797 1000 - -
Spst3g04549 1052 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 486 1017 - -
Spst3g04549 1052 Pfam Salt stress response/antifungal 474 535 IPR002902 -
Spst3g04549 1052 Pfam Salt stress response/antifungal 566 636 IPR002902 -
Spst3g04549 1052 ProSiteProfiles Gnk2-homologous domain profile. 542 639 IPR002902 -
Spst3g04549 1052 SUPERFAMILY Protein kinase-like (PK-like) 708 1005 IPR011009 -
Spst3g04549 1052 ProSiteProfiles Protein kinase domain profile. 721 1004 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g04549 1052 CDD STKc_IRAK 727 990 - -
Spst3g04549 1052 Gene3D - 561 639 IPR038408 -
Spst3g04549 1052 Gene3D - 448 537 IPR038408 -
Spst3g04549 1052 FunFam Cysteine-rich receptor-like protein kinase 2 689 796 - -
Spst3g04549 1052 SMART serkin_6 721 1004 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g04549 1052 ProSiteProfiles Gnk2-homologous domain profile. 440 537 IPR002902 -
Spst3g04549 1052 Gene3D Phosphorylase Kinase; domain 1 698 796 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04549 Spst-Chr3 97155441 97168279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04549 399 1030 Receptor kinase-like Gene Family AT1G70520 41.504 8.73e-140 433
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Spst3g04549 Pkinase 4.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04549 - - gmx:100780384 951.429