Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04533 ATGCCTGTAAATCCATGGACCCTCTTCTTCTTGTGTATTTCCCTTCTACTTTCATACCATTTTCTCATAGCTGCTGCAGTGAACCAACAAGGGGAGGCTCTTCTATCATGGAGGAGAACCCTGAACGGGTCCCTGGAGGTATTGAGTAACTGGGACCCAGTTCAAGACACCCCATGTAGATGGTATGGAGTGAGTTGCAACTGGAAGAACGAAGTAGTACAATTGGATCTGAGGTATGTGGATTTGCTTGGAAGACTTCCCAGCAATTTCACCTCATTGCTTTCATTAAGCAGTTTGATCTTAACCGGAACCAACCTCACGGGTCCAATTCCAAAAGAAATAGGCTACCTCCTGGAACTCACCTACTTAGACTTAAGTGATAATGCCTTGAGTGGCGAAATCCCAACTGACCTATGTTACTTGTTTAAACTCGAGGAACTCCATCTCAACTCCAACAACCTTATGGGGTCCATTCCAGTTGCAATTGGGAACCTCACAAAGTTGCAGAAGCTGATCCTATATGACAACCAACTCAGCGGGGAAGTTCCTACCACCATCGGCAACCTTAAGAGTCTTCAAGTGATAAGAGCAGGAGGAAACAAGAACCTGGAGGGTACTTTACCACAAGAAATTGGCAACTGCTCCAGTTTAGTGATGTTGGGCCTTGCTGAAACAAGCCTCTCAGGTTCTCTGCCACCAACTCTTGGCCTTCTGAAGAATCTTGAAACCATTGCCATTTACACTTCCTTGCTCTCCGGTGAAATACCACCTGAACTAGGGGACTGCAAAGGGCTCCAAAACATTTACCTTTACGAGAACTCTCTCACTGGATCCATACCAAGCAAGTTGGGAAACCTTAAGAACCTCGAAAACCTTCTACTGTGGCAGAACAACCTAGTTGGCACCATCCCCCCGGAGATTGGAAACTGCGAACAGTTGTCAGTGATTGACGTGTCAATAAACTCACTGACCGGAAGCATTCCCAAAACATTCGGGAACTTGACATCATTGCAAGAGCTCCAACTCAGTGTCAACCAGATTTCGGGGGAGATTCCAGGTGAACTGGGGAAGTGTCAGCAACTCACACATGTGGAGCTTGACAACAATCTCATCACGGGTACCATACCTTCCGAATTGGGAAACCTTGCGAATCTAACGCTCTTGTTCTTATGGCACAACAAGCTGCAAGGTAATATTCCTTCTTCACTTTCCAATTGTCAAAATCTCGAGGCTATTGATCTGTCGCAGAATGGATTAACGGGTCCAATACCCAAGGGGATCTTCCAGCTCAAGAATCTCAACAAGCTCTTGCTACTCTCCAATAATCTCTCAGGAAAAATCCCCTCTGAAATTAGGAATTGTTCCTCCCTAATTCGATTCCGAGCCAACGACAACAACATCACTGGGAACATTCCCTCGCAGATTGGGAATCTCAACAATTTGAATTTCCTCGACCTAGGGAACAATCGGATTTCTGGCAGTATTCCGGAGGAGATTTCCGGCTGCCGCAATCTCGCATTTTTTGATATACATTCCAACTTCCTCTCCGGAAACCTACCGGAAAGTTTGAGCCGGCTTGATTCGCTTCAGTTTCTCGATGTTTCCGATAACATGATCGAAGGTATACTGAAGCCTAACCTCGGCGAACTCACCGCGCTCTCCAAGCTCGTTCTCGCGAAGAATCGAATCTCCGGCCCAATACCGAGTCAACTTGGTTCTTGTTCCAAGTTACAATTACTGGATCTCAGCAGCAACAATCTCTCCGGCAAAATCCCCGGCAGCATCGGCAATATCCCGGCACTGGAAATCACTCTGAATCTAAGCCTAAACCAGCTCTCCGGCGAGATACCTCAGGAGTTTTCTGGATTGACGAAGCTCGGAGTGCTGGACATTTCTCACAACGCCCTCAGTGGAAACATTCAATACCTCTCGAGTCTGCAAAATCTCGTGGTGCTCAACATTTCGTATAACAAATTCTCGGGACGCGTTCCGAACACGCCTTTCTTCGCGAAGTTGCCGTTGAGCGTGCTGGCGGGGAACCCGGCCCTGTGCTTTTCCGGCAACGAGTGCAGCGGTGAGGGCGGTGGTAGGTCAGGGCGGCGGGCAAGGGTAGCGCGCGTAGCGATGGTGGTCCTGTTGTGCACCGCGTGCGTGCTACTCATGGCGGCGCTGTACGTCGTGGTCGCAGCGAAACGACGCGGGGACCGCGAAAACGACGTGGAGATAGATGGAAAGGACAGCGACGCGGACATGGCCCCACCATGGGAAGTGACACTGTACCAGAAACTCGATTTGTCCATCTCTGACGTAGCGAAATGTCTCTCCGCTGGCAATGTCATCGGCCACGGCCGATCCGGCGTGGTTTATAGGGTTGACTTGCCGGCCACAGGACTCGCCATCGCGGTGAAGAAGTTCAGGTTGTCGGAGAAATTCTCCGCGGCGGCTTTCTCGTCGGAGATTGCGACGCTGGCGAGAATCCGTCACCGGAACATCGTGCGGCTGCTGGGTTGGGGGGCCAACAGGAGAAGCAAGTTACTGCTTTACGATTATTTACCGAACGGTAACTTGGACACTCTGTTGCACGAGGGGTGCACAGGATTAATTGACTGGGAGACAAGGCTCAAGATAGCATTGGGCGTGGCCGAGGGCGTGGCTTACTTGCACCACGATTGCGTGCCAGCTATCTTGCACCGGGACGTCAAGGCGCAGAACATTTTGTTAGGAGACAGATATGAACCCTGTCTGGCTGATTTTGGTTTCGCTCGCTTCGTCGAAGAGGATCACGCTTCCTTTTCCGTTAATCCACAGTTCGCAGGCTCCTACGGTTACATTGCTCCCGAATATGCTTGCATGCTTAAAATCACAGAGAAGAGCGACGTGTACAGCTTTGGAGTGGTCCTACTGGAGACAATAACGGGGAAACGGCCAGTGGATCCATCATTCCCGGATGGGCAACATGTTATTCAGTGGGTCAGGGAGCACCTCAAGAGCAAGAAGGACCCAATCGAGGTTCTGGATTCCAAGCTCCAAGGCCATCCAGACACACAAATCCAAGAGATGCTACAAGCACTTGGTATTGCTCTCTTGTGCACTAGCAATCGTGCAGAGGATCGACCCACAATGAAAGATGTTGCAGCATTATTGAGAGAAATTCGTCATGATCCTCCACCGGGTGCTGAGCCCCACAAGCCCAAACCCAAAACAACTGAAGCTTCCTCCTATTCCTCGTCCTCAGTCACCCCTGCTCAGTTGTTGCTCCTACAATCTTGTTCCAACTCCTCCTCACTAGCTTACTCCTCTTCCTCAGCAGCAGGCTACCACCCTCCAAGGAACCAATCCTGA 3342 0.5009 MPVNPWTLFFLCISLLLSYHFLIAAAVNQQGEALLSWRRTLNGSLEVLSNWDPVQDTPCRWYGVSCNWKNEVVQLDLRYVDLLGRLPSNFTSLLSLSSLILTGTNLTGPIPKEIGYLLELTYLDLSDNALSGEIPTDLCYLFKLEELHLNSNNLMGSIPVAIGNLTKLQKLILYDNQLSGEVPTTIGNLKSLQVIRAGGNKNLEGTLPQEIGNCSSLVMLGLAETSLSGSLPPTLGLLKNLETIAIYTSLLSGEIPPELGDCKGLQNIYLYENSLTGSIPSKLGNLKNLENLLLWQNNLVGTIPPEIGNCEQLSVIDVSINSLTGSIPKTFGNLTSLQELQLSVNQISGEIPGELGKCQQLTHVELDNNLITGTIPSELGNLANLTLLFLWHNKLQGNIPSSLSNCQNLEAIDLSQNGLTGPIPKGIFQLKNLNKLLLLSNNLSGKIPSEIRNCSSLIRFRANDNNITGNIPSQIGNLNNLNFLDLGNNRISGSIPEEISGCRNLAFFDIHSNFLSGNLPESLSRLDSLQFLDVSDNMIEGILKPNLGELTALSKLVLAKNRISGPIPSQLGSCSKLQLLDLSSNNLSGKIPGSIGNIPALEITLNLSLNQLSGEIPQEFSGLTKLGVLDISHNALSGNIQYLSSLQNLVVLNISYNKFSGRVPNTPFFAKLPLSVLAGNPALCFSGNECSGEGGGRSGRRARVARVAMVVLLCTACVLLMAALYVVVAAKRRGDRENDVEIDGKDSDADMAPPWEVTLYQKLDLSISDVAKCLSAGNVIGHGRSGVVYRVDLPATGLAIAVKKFRLSEKFSAAAFSSEIATLARIRHRNIVRLLGWGANRRSKLLLYDYLPNGNLDTLLHEGCTGLIDWETRLKIALGVAEGVAYLHHDCVPAILHRDVKAQNILLGDRYEPCLADFGFARFVEEDHASFSVNPQFAGSYGYIAPEYACMLKITEKSDVYSFGVVLLETITGKRPVDPSFPDGQHVIQWVREHLKSKKDPIEVLDSKLQGHPDTQIQEMLQALGIALLCTSNRAEDRPTMKDVAALLREIRHDPPPGAEPHKPKPKTTEASSYSSSSVTPAQLLLLQSCSNSSSLAYSSSSAAGYHPPRNQS 1113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04533 1113 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Spst3g04533 1113 MobiDBLite consensus disorder prediction 1052 1076 - -
Spst3g04533 1113 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 851 1065 - -
Spst3g04533 1113 PANTHER RECEPTOR-LIKE PROTEIN 55 417 1052 - -
Spst3g04533 1113 ProSitePatterns Serine/Threonine protein kinases active-site signature. 895 907 IPR008271 GO:0004672|GO:0006468
Spst3g04533 1113 PRINTS Leucine-rich repeat signature 120 133 - -
Spst3g04533 1113 PRINTS Leucine-rich repeat signature 623 636 - -
Spst3g04533 1113 Pfam Leucine rich repeat 312 371 IPR001611 GO:0005515
Spst3g04533 1113 Pfam Protein kinase domain 777 1044 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g04533 1113 ProSiteProfiles Leucine-rich repeat profile. 480 502 IPR001611 GO:0005515
Spst3g04533 1113 FunFam LRR receptor-like serine/threonine-protein kinase 763 850 - -
Spst3g04533 1113 SUPERFAMILY Protein kinase-like (PK-like) 763 1050 IPR011009 -
Spst3g04533 1113 Gene3D Transferase(Phosphotransferase) domain 1 851 1058 - -
Spst3g04533 1113 Gene3D Ribonuclease Inhibitor 25 199 IPR032675 -
Spst3g04533 1113 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 27 200 - -
Spst3g04533 1113 Gene3D Phosphorylase Kinase; domain 1 755 850 - -
Spst3g04533 1113 SMART serkin_6 774 1048 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g04533 1113 Gene3D Ribonuclease Inhibitor 436 691 IPR032675 -
Spst3g04533 1113 Gene3D Ribonuclease Inhibitor 200 435 IPR032675 -
Spst3g04533 1113 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 201 424 - -
Spst3g04533 1113 SUPERFAMILY L domain-like 27 300 - -
Spst3g04533 1113 FunFam Leucine-rich repeat receptor protein kinase EMS1 520 603 - -
Spst3g04533 1113 FunFam Putative LRR receptor-like serine/threonine-protein kinase 604 689 - -
Spst3g04533 1113 MobiDBLite consensus disorder prediction 1052 1067 - -
Spst3g04533 1113 ProSitePatterns Protein kinases ATP-binding region signature. 780 804 IPR017441 GO:0005524
Spst3g04533 1113 ProSiteProfiles Protein kinase domain profile. 774 1048 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g04533 1113 SMART LRR_sd22_2 117 149 - -
Spst3g04533 1113 SMART LRR_sd22_2 262 288 - -
Spst3g04533 1113 SMART LRR_sd22_2 526 544 - -
Spst3g04533 1113 SMART LRR_sd22_2 574 600 - -
Spst3g04533 1113 SMART LRR_sd22_2 165 191 - -
Spst3g04533 1113 SMART LRR_sd22_2 623 645 - -
Spst3g04533 1113 SMART LRR_sd22_2 478 501 - -
Spst3g04533 1113 SMART LRR_sd22_2 382 411 - -
Spst3g04533 1113 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 425 519 - -
Spst3g04533 1113 SMART LRR_typ_2 286 310 IPR003591 -
Spst3g04533 1113 SMART LRR_typ_2 165 189 IPR003591 -
Spst3g04533 1113 SMART LRR_typ_2 526 550 IPR003591 -
Spst3g04533 1113 SMART LRR_typ_2 407 430 IPR003591 -
Spst3g04533 1113 SMART LRR_typ_2 334 358 IPR003591 -
Spst3g04533 1113 SMART LRR_typ_2 382 406 IPR003591 -
Spst3g04533 1113 SMART LRR_typ_2 478 502 IPR003591 -
Spst3g04533 1113 SMART LRR_typ_2 117 141 IPR003591 -
Spst3g04533 1113 SUPERFAMILY RNI-like 267 643 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04533 Spst-Chr3 97034921 97038839 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04533 26 1103 Receptor kinase-like Gene Family AT5G56040 54.554 0.0 1122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Spst3g04533 Pkinase 1.9e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04533 - - gmx:100778064 1880.92