Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04525 ATGCTGAGTGCTCCATCCTTTAACAAATCTGAGGCTTATACCTCTCGTTGGCTTAGACTACTTTGTCTCGGGGGGGAAAAAGAGAACATCTTCCGAAGAACCTCCAACAAGGGAAAAAAGTGCAGGGAAATGGCATCATCCAGCTCTTACAATTCTCCATGTGCTGCCTGCAAATTCTTGAGGAGGAAATGCATGCCAGGATGCATCTTTGCCCCTTACTTCCCACCTGAAGAGCCTCAAAAATTCGCAAACGTTCACAAAATTTTTGGTGCTAGCAATGTGACCAAACTCCTCAACGAACTCCTTCCTCACCAGAGGGAGGATGCAGTGAACTCCCTCGCCTATGAAGCAGAGGCACGCGTGAGGGACCCAGTTTATGGCTGCGTAGGAGCCATCTCTTTCCTGCAGAGACAAGTTCAAAGGCTCCAAAAGGAGCTTGATGCTGCAAACGCTGATCTGCTACGTTACTCTTACACTGACATCCCTCCAGCATCTCTTTCTGTGCCACCAGGACTTGCTTCATTTCAACAAGTACCCCAAAGGCAGTTTACTGCAAGATTTGGTAACGAAGGAACTGGATTTTATCGGCAATCTACTACAACTACTGCTTATTCCTTTCCTTATGCTCTTCCTTGGACTGACACCTCTTCGGAGGACATCAGTGAGGGAGGAGTGGGAGGAGGTAATTTGTGA 693 0.4762 MLSAPSFNKSEAYTSRWLRLLCLGGEKENIFRRTSNKGKKCREMASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLLRYSYTDIPPASLSVPPGLASFQQVPQRQFTARFGNEGTGFYRQSTTTTAYSFPYALPWTDTSSEDISEGGVGGGNL 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04525 230 ProSiteProfiles LOB domain profile. 52 153 IPR004883 -
Spst3g04525 230 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 51 177 - -
Spst3g04525 230 Coils Coil 132 152 - -
Spst3g04525 230 Pfam Lateral organ boundaries (LOB) domain 53 150 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04525 Spst-Chr3 96941889 96943696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04525 44 230 AS2 family AT5G63090 63.402 1.94e-75 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Spst3g04525 LOB 4.8e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04525 - - gmx:100775922 356.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04525 3 96941889 96943696 Spst9g01995 9 37453251 37457487 ECH
Spst3g04525 3 96941889 96943696 Spst3g04525 3 96941889 96943696 ECH
Spst3g04525 3 96941889 96943696 Spst9g01995 9 37453251 37457487 PCT