Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04520 ATGATGGTTAACCCTAACCCTAATCCTACTCCGGAAGAGGAAAAGAACCTCAAAGAGGAGCTGCTGGGTCCCATCTTACTGGGAGAGCGCGTACTAAAACTGGCTCAGGAGGCGGAGTCGTCCAAGGTGGACTGCACGGACCTGGCGCGGAAGGTGCAGCTTGTGTGCGACAACCTGCGCTCCGTTGTGCGCGTCGTGTCGGGGGCGCAGTGCGTGAACGAGCGCCCCATACGCCGCATCGTCGGCGAGGTCTCCAAAAACCTAGAGCGCACGTTAGCGTTTGTGCGCAAGTGCAAGAAGCACGGCGGTGTCCTCCGCCAGGTCTTCTCCATGACCACCACCGCCGACTTCCGGAAGGTCTGGAACCTTCTGGAATCTTCCAACGGTGACATGGTGTGGCTCCTCACCATCTTGGATTCAAAGGAGGGCACCAATGTCTCCCTCCCCCCCATCGCCAGCAACGACCCCATCCTTGCATGGGTCTGGACCCTCACCTACACTCTCCAATTGGGTCAGCCCAAGGACCGCGCTGAAGCCGCCACTGAACTTGGCTCCCTCGCCAGAGACAACGACCGTACAAAATTCATCATCTTGGAGGAAGGTGGAGTTCCCCCCCTCCTCAAGCTTCTCAAGGAAGCTTCTTCCCCCGATGCTCAGGTTGCTGCTGCCAATGCCCTTGTCAACATTGCAACTAATCAAGACAGGGTCGTTAGTTTCATCCTAGAGTCCCATGCTGTCCCGACTATTGTTCAGGTCCTTGGTGATTCCCCTATGAGGGTTCGTGTCTCTGTTGCTAATTTGATCTCTGCTATGGCTGAGCAACATGAACCTGCTCGCGAGGAGTTCGTGAGGGCCAATGTGACTAGGCCCCTTGTGTCTTTGTTGTCCATGGATACTGTCCTTGCTGACCCCATGGCCGGTCGAGCTAGCATCCATTCGCTTGTTCTGAATTTGTCCAACGTTGGTGAAGCGAATTTGGATGGGAGTAGCCGCGGCTCCAGTCACCATCGGAGGGAAAGAGAAAGAGAGGTTGAGAGCTCGGAGTTGAGGAATGACGTCAAAATCAGCTGTGCTATGGCTCTTTGGAAACTCTCCAAAGGGTGTCTTTCAAGTTGCAAGAAGATTACAGAGACTAAAGGTTTGCTTTGTCTTGCTAAGATTATAGAGTCTGAGAGTGGAGAATTGCAGCACAATTGTCTTATGGCTGTCATGGAGATTGCTGCTGTGGCAGAGTTCAATGCTGATCTTAGAAGAGGTGCTTTCAAGCGAACTGCGCTGGCAGCAAAGGCAGTTTTGGATCAGCTTCTGAGGGTGGTTGAGGAAGAGAATGATCCGGCATTGCGGATTCCTGCCATTAAGGCAATTGGGTCCTTGGCCAGAAACTTCTCTGGAAAGGTTCCGCAAGTTCTTGGTCCTTTAGTTTCTCAGCTTGGTAACAGAGATGTTGATGTAGCCAGTGAGGCTGCCATTGCTTTGGGGAAGTTTGTCAGCCAGGACAACTACAATCGTATTGACCATTCTAAGGCAATACTTGAGCTTGACGGGGTTCCAAAGCTAATGAGCCTGCTGCAGATAAATGATCGCCAACAAGTTCATGGCCTGATATTACTTTGTTACCTTGCCTTAAATGTAGGTAACAGTAAGGTCCTTGAGCAAGAACGTGCCTTGAGTACCTTAGAGAGGTTTACTCGGCCTGTTCAAACACAATATCCTGATTTGAAGGATCTTTTTGCAAAGGCCATACATCAACTCACTCTTTATCAGCCAGGAGCTCAATTGCACAGACAGCCCTTGGGGCTGTAA 1803 0.5158 MMVNPNPNPTPEEEKNLKEELLGPILLGERVLKLAQEAESSKVDCTDLARKVQLVCDNLRSVVRVVSGAQCVNERPIRRIVGEVSKNLERTLAFVRKCKKHGGVLRQVFSMTTTADFRKVWNLLESSNGDMVWLLTILDSKEGTNVSLPPIASNDPILAWVWTLTYTLQLGQPKDRAEAATELGSLARDNDRTKFIILEEGGVPPLLKLLKEASSPDAQVAAANALVNIATNQDRVVSFILESHAVPTIVQVLGDSPMRVRVSVANLISAMAEQHEPAREEFVRANVTRPLVSLLSMDTVLADPMAGRASIHSLVLNLSNVGEANLDGSSRGSSHHRREREREVESSELRNDVKISCAMALWKLSKGCLSSCKKITETKGLLCLAKIIESESGELQHNCLMAVMEIAAVAEFNADLRRGAFKRTALAAKAVLDQLLRVVEEENDPALRIPAIKAIGSLARNFSGKVPQVLGPLVSQLGNRDVDVASEAAIALGKFVSQDNYNRIDHSKAILELDGVPKLMSLLQINDRQQVHGLILLCYLALNVGNSKVLEQERALSTLERFTRPVQTQYPDLKDLFAKAIHQLTLYQPGAQLHRQPLGL 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04520 600 SMART arm_5 189 231 IPR000225 GO:0005515
Spst3g04520 600 SMART arm_5 232 273 IPR000225 GO:0005515
Spst3g04520 600 SMART arm_5 275 366 IPR000225 GO:0005515
Spst3g04520 600 SMART arm_5 502 542 IPR000225 GO:0005515
Spst3g04520 600 Gene3D - 339 595 IPR011989 -
Spst3g04520 600 Gene3D - 161 328 IPR011989 -
Spst3g04520 600 Pfam Armadillo/beta-catenin-like repeat 194 230 IPR000225 GO:0005515
Spst3g04520 600 SUPERFAMILY ARM repeat 172 584 IPR016024 -
Spst3g04520 600 MobiDBLite consensus disorder prediction 326 345 - -
Spst3g04520 600 Gene3D - 21 136 IPR036537 GO:0007166
Spst3g04520 600 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 201 234 IPR000225 GO:0005515
Spst3g04520 600 MobiDBLite consensus disorder prediction 330 345 - -
Spst3g04520 600 PANTHER ARMADILLO REPEAT ONLY 4 16 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04520 Spst-Chr3 96874724 96876526 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04520 161 265 U-box Gene Family AT3G46510 33.645 5.31e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04520 - - gmx:100813824 1002.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04520 3 96874724 96876526 Spst3g04520 3 96874724 96876526 ECH