Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04519 ATGACGACTAGGTTTAAGAAGAACAGGAAGAAGAGAGGTCATGTGAGCGCCGGGCACGGTCGTATCGGAAAGCACAGAAAGCATCCCGGAGGTCGCGGTAACGCTGGAGGTATGCATCACCACCGTATCCTCTTCGACAAGTACCATCCCGGTTACTTCGGTAAGGTGGGTATGCGCTACTTCCACAAGCTCCGCAACAAGTTCTATTGCCCCATCGTCAACATCGACAAGCTCTGGTCCCTTCTCCCTCAGGAGGCCAAGGACAAGGCCACCGCCGACAAGGCACCCTTGCTCGATGTCACCCAGTTCGGGTACTTTAAGGTTTTGGGTAAAGGGGTTTTGCCTCAGAACCAGCCTCTCGTTGTGAAGGCCAAACTTGTCTCCAAGATTGCCGAGAAGAAGATCAAGGAGGCAGGTGGGGCCGTTGTTCTCACCGCTTAG 441 0.542 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFYCPIVNIDKLWSLLPQEAKDKATADKAPLLDVTQFGYFKVLGKGVLPQNQPLVVKAKLVSKIAEKKIKEAGGAVVLTA 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04519 146 Hamap 50S ribosomal protein L15 [rplO]. 1 145 IPR030878 GO:0003735|GO:0006412|GO:0015934
Spst3g04519 146 ProSitePatterns Ribosomal protein L15 signature. 107 139 IPR001196 GO:0003735|GO:0005840|GO:0006412
Spst3g04519 146 Gene3D - 58 146 - -
Spst3g04519 146 SUPERFAMILY Ribosomal proteins L15p and L18e 6 145 IPR036227 -
Spst3g04519 146 FunFam 60S ribosomal protein L27a 58 146 - -
Spst3g04519 146 MobiDBLite consensus disorder prediction 1 35 - -
Spst3g04519 146 Pfam Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 143 IPR021131 -
Spst3g04519 146 PANTHER 60S RIBOSOMAL PROTEIN L27A 1 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04519 Spst-Chr3 96869066 96869506 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04519 1 146 Cytoplasmic Ribosomal Protein Gene Family AT1G70600 86.301 3.74e-93 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04519 K02900 - gmx:100527293 304.293
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04519 3 96869066 96869506 Spst3g04519 3 96869066 96869506 ECH