Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04518 ATGAATCCCTACGACAGATACTCCAATCCTGCCCGATACTCCAATCCTGCCCCTTTTCACGCTCGTCGCAGTGATTTTGTTGGATCTATTCCGCCGCCTTCGTTCGGCAGTCGTGGCGATGCGGTTCCCTACGGCATCTTTAGACCTAACGGGTTAGGATCCAGACCCGTTTCTCCGATGCCGCCCTTCGTGCCCCCTCCTGGGGGATTTCACTTAGGGCGAGGTAGTGGTAGAGTGGGCAATGGTCACGTAAGTGATAGAAAACACGATGTAGGTCGTGGGGGTGGTGGGAGAGGTCGTGGCGGTGGTAGAGGCGTAACTCACGGTTTTAGGGACTCCAGGAGAGGAGGTAGACACGATGGTGGGTCTTCTAGAGACGATTTGAACAACGTTACACTTCCGAAGCAGAATTTTAAGAATTTGGTCCCTTTTGAGAAGAATTTTTACGTGGAGTGCCCTGTTGTGAGAGCCATGTCTGAACAAGAAGTTCTGCATTACCGTGCTTTTAGAGAGATCACCGTGCAAGGGCATGATGTGCCGAAGCCTGTACGGATGTTTCACGAGGCGAACTTTCCTGATTATTGCCTTGAGGTCATTTCCAATCTGGGTTTTGCTGAACCCACTCCAATTCAGGCTCAGGGTTGGCCCATGGCTATGAAGGGTAGGGATTTAATTGGCATTGCTGAGACTGGCTCGGGTAAAACTTTGGCGTATTTGCTTCCTGCTTTAGTGCACGTCAATGCTCAACCTCGACTAGCATATGGTGATGGTCCCATTGTCTTGGTGTTAGCGCCGACTAGAGAGCTAGCTATTCAAATTCAAGAAGAGGCTCTGAAATTTGGGTCTCGAACAAATATTAGAAGTACATGCATCTATGGTGGTGCACCAAAGGGCCCTCAAATTCGTGAACTTAAAAGAGGTGTTGAGATTGTTATTGCAACACCTGGTCGTTTAATAGATATGTTGGAAGCTCAGCACACAAATCTTCAAAGAGTGACTTACCTTGTGTTGGATGAAGCTGATCGAATGCTGGACATGGGTTTTGAACCTCAGATACGGAAAATTATTGGCCAGATTCGACCTGATAGGCAAACATTATTATGGAGTGCTACATGGCCAAGGGAGGTTGAAACTTTGGCAAGGCAGTTTCTGCGCAATCCATACAAGGTAATTATCGGATCACCAAACCTAAAGGCAAATCAATCTATAAATCAAGTTGTTGAAGTTGTATCAGACATGGAAAAATACAAAAGATTAATCAGACTGCTGAAAGAAGTCATGGATGGGAGCCGAATTCTAATATTTATGGAGACAAAAAAGGGATGTGATCAAGTTACAAGACAGATGAGAATTGATGGGTGGCCTGCACTATCCATCCATGGTGATAAAAACCAGGCTGAAAGGGATTGGGTCTTGGCTGAATTTAAGAGTGGCAGAAGTCCAATTATGACTGCCACTGATGTCGCTGCACGGGGTCTTGATGTGAAAGACATTAAATGTGTGATCAATTATGATTTTCCGTCAAGCCTGGAAGATTATGTACACAGAATTGGTCGAACTGGTCGTGCAGGGGCCAAAGGAACTGCATACACATTTTTTACACATGCCAATGCCAAGTTTGCTAGAGATCTGATCAAGATTTTACAAGATGCTGGTCAGGTTGTGAGTCCTGCATTGTCTGCATTGGTTCGGTCAGCTGGTTCTGGTCAATTTCGATCAGGGGGAAGTTTTCGCACAAGAGGACGCGGAGGCTATGGAAATCGAGGTTTAACATCAGGGTCCAATGCTATTCCTCTAGGTTCGAAGAGGCCTTGGCAGTGTCTGTAG 1827 0.4636 MNPYDRYSNPARYSNPAPFHARRSDFVGSIPPPSFGSRGDAVPYGIFRPNGLGSRPVSPMPPFVPPPGGFHLGRGSGRVGNGHVSDRKHDVGRGGGGRGRGGGRGVTHGFRDSRRGGRHDGGSSRDDLNNVTLPKQNFKNLVPFEKNFYVECPVVRAMSEQEVLHYRAFREITVQGHDVPKPVRMFHEANFPDYCLEVISNLGFAEPTPIQAQGWPMAMKGRDLIGIAETGSGKTLAYLLPALVHVNAQPRLAYGDGPIVLVLAPTRELAIQIQEEALKFGSRTNIRSTCIYGGAPKGPQIRELKRGVEIVIATPGRLIDMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTLLWSATWPREVETLARQFLRNPYKVIIGSPNLKANQSINQVVEVVSDMEKYKRLIRLLKEVMDGSRILIFMETKKGCDQVTRQMRIDGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAYTFFTHANAKFARDLIKILQDAGQVVSPALSALVRSAGSGQFRSGGSFRTRGRGGYGNRGLTSGSNAIPLGSKRPWQCL 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04518 608 CDD DEADc_DDX5_DDX17 196 390 - -
Spst3g04518 608 MobiDBLite consensus disorder prediction 1 20 - -
Spst3g04518 608 MobiDBLite consensus disorder prediction 73 131 - -
Spst3g04518 608 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 418 563 IPR001650 -
Spst3g04518 608 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 158 562 - -
Spst3g04518 608 MobiDBLite consensus disorder prediction 81 95 - -
Spst3g04518 608 Gene3D - 397 567 IPR027417 -
Spst3g04518 608 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 184 212 IPR014014 GO:0003724
Spst3g04518 608 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 256 544 IPR027417 -
Spst3g04518 608 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 215 390 IPR014001 -
Spst3g04518 608 Gene3D - 157 396 IPR027417 -
Spst3g04518 608 Pfam Helicase conserved C-terminal domain 414 524 IPR001650 -
Spst3g04518 608 MobiDBLite consensus disorder prediction 568 597 - -
Spst3g04518 608 FunFam ATP-dependent RNA helicase RhlB 394 566 - -
Spst3g04518 608 SMART ultradead3 203 406 IPR014001 -
Spst3g04518 608 CDD SF2_C_DEAD 403 533 - -
Spst3g04518 608 MobiDBLite consensus disorder prediction 105 125 - -
Spst3g04518 608 SMART helicmild6 443 524 IPR001650 -
Spst3g04518 608 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 336 344 IPR000629 -
Spst3g04518 608 FunFam probable ATP-dependent RNA helicase DDX17 146 393 - -
Spst3g04518 608 Pfam DEAD/DEAH box helicase 208 379 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04518 Spst-Chr3 96861753 96867616 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04518 181 544 Eukaryotic Initiation Factors Gene Family AT3G19760 35.342 7.06e-69 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04518 K12823 - gmx:100777610 994.956