Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst3g04487 | ATGTCCATGCTTTTCTCTCTCACAACCACGCCTTCCTTCAACTCCCTAACAATGGCGGAATCCTGCATTCTCTCTCTCCCTTCTCTCTTCCACGCCAAAAACAAAACCCTTTCTCTCTCAATTCCCTCAAAGCGCCTCAATCTCCAATTTCCATGCTCTAATACTAAGCTCTTTCACCTCTCCACCAACGCCAACCGCCACCCCTCTGTCCTCACATTCGTCGCCCAGACATCGGATTGGGCCCAAGAAGAAGAGGAAGAGAACCCCACGTGGGAGAACCAAGGCGACAGTGTGTGGGGAACTGAAGAAAGTGACGATGACGCCGTGGAGGAAGTGACCGGAGGGGGTTTCGCTCAACCACCGGAGGAAGTTAAGATCTTTGTTGGGAACTTGCCTTATGATGTTGATAGCGAGAAATTGGCTTCGCTTTTTGAGCAGGCTGGCACCGTTGAGGCTGCCGAGGTCATTTATAATAGGATCACTGACCGGAGTCGTGGCTTTGGATTTGTCACTATGAGTACGCTTGAAGAGGTTGAAAAGGCTGTCGAGAAGTTCAGTGGTTATGAACTAAATGGAAGATTGTTGACTGTTAATAAAGCCGCTCCAAAAGGAGCACAGCCTGATCGCCCACCACGCCCACCACGAACATTTAATAATTCTGGTTTAAGAGTCTACGTTGGTAACTTGCCATGGGATGTTGACAATGCACGGCTGGAGCAAATTTTCAGTGAGCATGGTAAGGTTGTGGAAGCTCGGGTGGTCTACGACCGAGAGAGTGGGCGATCGCGTGGCTTTGGCTTTGTCACAATGTCCAGTGAGACTGATGTGAATGATGCAATTGCTGCTCTTGATGGTCAGGAGTTGGATGGGAGACCAATCAGAGTGAATGTTGCAGAGGAAAGGCCTAGACGCAGCTCCTTTTGA | 924 | 0.4968 | MSMLFSLTTTPSFNSLTMAESCILSLPSLFHAKNKTLSLSIPSKRLNLQFPCSNTKLFHLSTNANRHPSVLTFVAQTSDWAQEEEEENPTWENQGDSVWGTEESDDDAVEEVTGGGFAQPPEEVKIFVGNLPYDVDSEKLASLFEQAGTVEAAEVIYNRITDRSRGFGFVTMSTLEEVEKAVEKFSGYELNGRLLTVNKAAPKGAQPDRPPRPPRTFNNSGLRVYVGNLPWDVDNARLEQIFSEHGKVVEARVVYDRESGRSRGFGFVTMSSETDVNDAIAALDGQELDGRPIRVNVAEERPRRSSF | 307 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst3g04487 | 307 | MobiDBLite | consensus disorder prediction | 81 | 102 | - | - | |
Spst3g04487 | 307 | CDD | RRM2_NsCP33_like | 223 | 298 | - | - | |
Spst3g04487 | 307 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 224 | 294 | IPR000504 | GO:0003723 | |
Spst3g04487 | 307 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 126 | 195 | IPR000504 | GO:0003723 | |
Spst3g04487 | 307 | SUPERFAMILY | RNA-binding domain, RBD | 120 | 221 | IPR035979 | GO:0003676 | |
Spst3g04487 | 307 | Gene3D | - | 74 | 207 | IPR012677 | - | |
Spst3g04487 | 307 | Gene3D | - | 208 | 306 | IPR012677 | - | |
Spst3g04487 | 307 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 222 | 300 | IPR000504 | GO:0003723 | |
Spst3g04487 | 307 | PANTHER | OS02G0815200 PROTEIN | 35 | 303 | - | - | |
Spst3g04487 | 307 | SMART | rrm1_1 | 125 | 198 | IPR000504 | GO:0003723 | |
Spst3g04487 | 307 | SMART | rrm1_1 | 223 | 296 | IPR000504 | GO:0003723 | |
Spst3g04487 | 307 | FunFam | 31 kDa ribonucleoprotein, chloroplastic | 211 | 306 | - | - | |
Spst3g04487 | 307 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 124 | 202 | IPR000504 | GO:0003723 | |
Spst3g04487 | 307 | SUPERFAMILY | RNA-binding domain, RBD | 210 | 305 | IPR035979 | GO:0003676 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst3g04487 | Spst-Chr3 | 96447764 | 96450099 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst3g04487 | 94 | 304 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 32.420 | 1.74e-25 | 104 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst3g04487 | - | - | gmx:100804984 | 470.7 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Spst3g04487 | 3 | 96447764 | 96450099 | Spst9g02046 | 9 | 41031104 | 41033246 | ECH | |
Spst3g04487 | 3 | 96447764 | 96450099 | Spst3g04487 | 3 | 96447764 | 96450099 | ECH | |
Spst3g04487 | 3 | 96447764 | 96450099 | Spst9g02046 | 9 | 41031104 | 41033246 | PCT |