Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04487 ATGTCCATGCTTTTCTCTCTCACAACCACGCCTTCCTTCAACTCCCTAACAATGGCGGAATCCTGCATTCTCTCTCTCCCTTCTCTCTTCCACGCCAAAAACAAAACCCTTTCTCTCTCAATTCCCTCAAAGCGCCTCAATCTCCAATTTCCATGCTCTAATACTAAGCTCTTTCACCTCTCCACCAACGCCAACCGCCACCCCTCTGTCCTCACATTCGTCGCCCAGACATCGGATTGGGCCCAAGAAGAAGAGGAAGAGAACCCCACGTGGGAGAACCAAGGCGACAGTGTGTGGGGAACTGAAGAAAGTGACGATGACGCCGTGGAGGAAGTGACCGGAGGGGGTTTCGCTCAACCACCGGAGGAAGTTAAGATCTTTGTTGGGAACTTGCCTTATGATGTTGATAGCGAGAAATTGGCTTCGCTTTTTGAGCAGGCTGGCACCGTTGAGGCTGCCGAGGTCATTTATAATAGGATCACTGACCGGAGTCGTGGCTTTGGATTTGTCACTATGAGTACGCTTGAAGAGGTTGAAAAGGCTGTCGAGAAGTTCAGTGGTTATGAACTAAATGGAAGATTGTTGACTGTTAATAAAGCCGCTCCAAAAGGAGCACAGCCTGATCGCCCACCACGCCCACCACGAACATTTAATAATTCTGGTTTAAGAGTCTACGTTGGTAACTTGCCATGGGATGTTGACAATGCACGGCTGGAGCAAATTTTCAGTGAGCATGGTAAGGTTGTGGAAGCTCGGGTGGTCTACGACCGAGAGAGTGGGCGATCGCGTGGCTTTGGCTTTGTCACAATGTCCAGTGAGACTGATGTGAATGATGCAATTGCTGCTCTTGATGGTCAGGAGTTGGATGGGAGACCAATCAGAGTGAATGTTGCAGAGGAAAGGCCTAGACGCAGCTCCTTTTGA 924 0.4968 MSMLFSLTTTPSFNSLTMAESCILSLPSLFHAKNKTLSLSIPSKRLNLQFPCSNTKLFHLSTNANRHPSVLTFVAQTSDWAQEEEEENPTWENQGDSVWGTEESDDDAVEEVTGGGFAQPPEEVKIFVGNLPYDVDSEKLASLFEQAGTVEAAEVIYNRITDRSRGFGFVTMSTLEEVEKAVEKFSGYELNGRLLTVNKAAPKGAQPDRPPRPPRTFNNSGLRVYVGNLPWDVDNARLEQIFSEHGKVVEARVVYDRESGRSRGFGFVTMSSETDVNDAIAALDGQELDGRPIRVNVAEERPRRSSF 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04487 307 MobiDBLite consensus disorder prediction 81 102 - -
Spst3g04487 307 CDD RRM2_NsCP33_like 223 298 - -
Spst3g04487 307 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 224 294 IPR000504 GO:0003723
Spst3g04487 307 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 126 195 IPR000504 GO:0003723
Spst3g04487 307 SUPERFAMILY RNA-binding domain, RBD 120 221 IPR035979 GO:0003676
Spst3g04487 307 Gene3D - 74 207 IPR012677 -
Spst3g04487 307 Gene3D - 208 306 IPR012677 -
Spst3g04487 307 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 222 300 IPR000504 GO:0003723
Spst3g04487 307 PANTHER OS02G0815200 PROTEIN 35 303 - -
Spst3g04487 307 SMART rrm1_1 125 198 IPR000504 GO:0003723
Spst3g04487 307 SMART rrm1_1 223 296 IPR000504 GO:0003723
Spst3g04487 307 FunFam 31 kDa ribonucleoprotein, chloroplastic 211 306 - -
Spst3g04487 307 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 124 202 IPR000504 GO:0003723
Spst3g04487 307 SUPERFAMILY RNA-binding domain, RBD 210 305 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04487 Spst-Chr3 96447764 96450099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04487 94 304 Eukaryotic Initiation Factors Gene Family AT3G16380 32.420 1.74e-25 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04487 - - gmx:100804984 470.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04487 3 96447764 96450099 Spst9g02046 9 41031104 41033246 ECH
Spst3g04487 3 96447764 96450099 Spst3g04487 3 96447764 96450099 ECH
Spst3g04487 3 96447764 96450099 Spst9g02046 9 41031104 41033246 PCT