Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04479 ATGATGGATGGTAGGAGGCATTCTGTTGATATTCCTATTTCCAAAACTCTTGTAGCACTGAGGAGAGTAAGGTCATTGAGGGATCCATCAACTAATGCTGTCAGCAGACTCTCGCCTTTGATTGATGATGGAGATTGGGAAAATGGTTCTAGTAATGGGGTTTCTCTGAGTTTGAGATTTCTGAATGCTTCTCATGCTGGTGATTGTGATGGTGGTAATGGTTTTTCAAGGTCAAATAGTTTAGACTTTAAGGGTCAGAGGGAGCAGGAAACTGCTGAGCTAGAATTGGAAATGTTGAACTCTAAGATGAACTATTGTGGGATCTCATGTCAGGAAGGGCGACGAGATGAGCAACTTGTTTATTCTAGTCCTAAGCAGCAAGGTATTTCTAGAGATAAATCACCAAATGAAAGCTGTTGTAGTATCCATGAAGGTGGAGGATTGGATTTGATTGCCATCACGCCTCCTTGTAATCATTTGAAGGATGGGGAGTTATGCTATTTATCAACTGCTTTGAGAGTAGATCACTCAAAGTCAGATAGGAAATTACTACGCAAGAATCACATGATACAATCTGGAGTGGTAGGTGATCTTGCAAGCCATTTAGGAAGTCAACAGTGCTCAGCTCGTTTTGCCTTGGAACAGACCACTCAAGATGTTGATGCTTTAGATAATCACCATGGATGTGGATTAAGGAGTTGTTGGTCAAAGTCACCGAGGTTTAGAGAATCAAATCATTATTCTGAAATAGAAGGCCTTCCCTTGATATTGCAGCACGCAAATGAAACGGATCTCAATGGAAATAGAAACATTAGATGCATCGGTGGTGAACTTAGTCCAACTATAGGAACTCCCAGAAGTTTATCTGTGAAATTCAGGCCAAAATCTTTTGACGATTTGGTCGGACAAAATGTGATACGTAAGTCTCTTTTGGGCGCTATCTCTAGAGGAAGGATATCATCATTTTATCTCTTCCATGGTCCACGCGGCACAGGCAAGACCTCAGCCTCTAGGATATTTGCTGCTGCACTGAATTGCCTATCCTCTTTGGAGCAAAAGCCTTGTGGTCTGTGTAGAGAATGTGTTTTGTTCTTCTCTGGAAGAAATAAAAATGTTAATGAGGTAGATTCTTTGAGAATCAATCGTGCAGAGAAGGTTAAATCCCTTGTTAAGCACGCATGCATTCCACCAATTTCCTCAAGTTTTAAGGTGTTCATTATTGATGAGTGCCAGTTATTGCATGGGGAAACATGGGCGTCCATTTTGAATAGTCTAGAGAATGTTTCTCATCATGTGGTTTTTGTGATGATCACTCCTGATTTGGATAACCTTCCTCGGAGTGCGATTTCACGGGCTCAGAGGTATCACTTTGCAAAGATAAAAGATGCCGACATTTCAAGAAGATTGGAAAGAATTTGTGTTGAAGAAGGTCTTGAATCGGAACAAGTTGCTTTGGACTTCATTGCTACTAGATCCTGTGGTTCTCTCAGGGATGCAGAAACTATGCTTGATCAACTGAGTTTGCTTGGTAAAAAGATCACAATTTCCTTAGTTCACGAGCTTACTGGGGTCATTTCTGATGATGAATTGCTTGATTTTTTGGACCTAGCATTATCATCTGACACTTCAAGCACAGTTATAAGAGCCCGGGAACTTGTCAGAACAAGGATAGATCCTTTACAACTTATATCACAGTTGGCAAATCTTATTATGGACATTCTTTCAGGGAAATGTGAACTTGGTGGTTCTGAAGTCAAAACAGGATTTTATAATAGATATACCTCGGAAGCAGACCTGCAGAAACTAAGTCATGCATTAGGAATACTGTCTGAAACAGAGAAGCAGTTGAGAATTTCCAAGAATCAAGCAACATGGTTCACTGCAGCTCTTCTACAGTTAAGCTCCGTAGAATATTCACCTGTGGATACAAATACTACGAAATTGTGTACACCAGCTGCTGTGTCCATTAGAGACGGTGATACCTGCAGCACATCTCCTAAAGGGGGCAGCTTGGAACATCTCTCTACAGCAGGTCAATCTGATGATAAGTTATATAGATTAGGAGTACAGGATGATCACAATGGAACATTGGATTCTATATGGTATAAAGCTACTGAGATGTGTCAATCTAGCAGGCTGAAAACTTTTCTCAGGAAACAGGGGAAGTTGTCCTCAGTTTTTGTTAGTCAAGGCCGTGCAGTTGCGGAGTTGGATTTCCACCATCGTGACTATGTAAGTAAGGCTGAGAAGTCATGGAAGTTGATTGCCAATTCTCTGCAGTTCATATTGGGCTGTAACCTTGAGCTCAGAATCAATTATGTACCTTCGTGTACCTCAGATTCTATGTACGCTAAATTGAAGCGGTCATCCTTCAATTTCTTCAGTTGTTCTCGTAGAATTCGTTGGAAATCATTATTAACTAATGAACAAGGAAGTGAATCAGACTATGCTGAATACACCTCTCGAAAGCCCATGATGAAAGATCAAACTCTAACTTGTTCCTCCGATTATGAACCCCGGGTGCCACCATTTGAGTCCTGCCATGGAATTGGAATGGAGGTTTTATCAACTTTGAGAAATAGTGAAGGGAATTTGCTAAGCTCAGGGAAAATGCTTTTGAATAGGCCAGATGAAGAGACTCCAAGAACTTATTGTTCTAGAGTTGATTCTGGCAAGGGAGAGGGATGCAATTATGAACACCTAGCTTCATCAACCCTTGATTTAGATAATCAGTCCGACTGTTTTCCTGGAACCCGCTGGCTTCATAAAAAGTTTGGTTCTTTTTATGCACCACAACAGAAGGACTTTGTTTTATCTATCCCCAAGTTCAAATGTTCTGAGATTTGTAGATATGATCTGGAACCCTTTGTCTTTTCCCACCGCCGCCCAAACAACTGCACTCAAGCTACTGAGAAAAAGTGTGAAAGGAGGTGA 2934 0.41 MMDGRRHSVDIPISKTLVALRRVRSLRDPSTNAVSRLSPLIDDGDWENGSSNGVSLSLRFLNASHAGDCDGGNGFSRSNSLDFKGQREQETAELELEMLNSKMNYCGISCQEGRRDEQLVYSSPKQQGISRDKSPNESCCSIHEGGGLDLIAITPPCNHLKDGELCYLSTALRVDHSKSDRKLLRKNHMIQSGVVGDLASHLGSQQCSARFALEQTTQDVDALDNHHGCGLRSCWSKSPRFRESNHYSEIEGLPLILQHANETDLNGNRNIRCIGGELSPTIGTPRSLSVKFRPKSFDDLVGQNVIRKSLLGAISRGRISSFYLFHGPRGTGKTSASRIFAAALNCLSSLEQKPCGLCRECVLFFSGRNKNVNEVDSLRINRAEKVKSLVKHACIPPISSSFKVFIIDECQLLHGETWASILNSLENVSHHVVFVMITPDLDNLPRSAISRAQRYHFAKIKDADISRRLERICVEEGLESEQVALDFIATRSCGSLRDAETMLDQLSLLGKKITISLVHELTGVISDDELLDFLDLALSSDTSSTVIRARELVRTRIDPLQLISQLANLIMDILSGKCELGGSEVKTGFYNRYTSEADLQKLSHALGILSETEKQLRISKNQATWFTAALLQLSSVEYSPVDTNTTKLCTPAAVSIRDGDTCSTSPKGGSLEHLSTAGQSDDKLYRLGVQDDHNGTLDSIWYKATEMCQSSRLKTFLRKQGKLSSVFVSQGRAVAELDFHHRDYVSKAEKSWKLIANSLQFILGCNLELRINYVPSCTSDSMYAKLKRSSFNFFSCSRRIRWKSLLTNEQGSESDYAEYTSRKPMMKDQTLTCSSDYEPRVPPFESCHGIGMEVLSTLRNSEGNLLSSGKMLLNRPDEETPRTYCSRVDSGKGEGCNYEHLASSTLDLDNQSDCFPGTRWLHKKFGSFYAPQQKDFVLSIPKFKCSEICRYDLEPFVFSHRRPNNCTQATEKKCERR 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04479 977 CDD HLD_clamp_pol_III_gamma_tau 460 523 IPR045085 -
Spst3g04479 977 SUPERFAMILY post-AAA+ oligomerization domain-like 530 631 IPR008921 GO:0003677|GO:0006260
Spst3g04479 977 SMART AAA_5 319 479 IPR003593 GO:0016887
Spst3g04479 977 Pfam DNA polymerase III, delta subunit 303 460 - -
Spst3g04479 977 NCBIfam DNA polymerase III subunit gamma/tau 287 633 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Spst3g04479 977 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 289 510 IPR027417 -
Spst3g04479 977 FunFam DNA polymerase III subunit gamma/tau 461 523 - -
Spst3g04479 977 Gene3D - 461 523 - -
Spst3g04479 977 Gene3D - 283 458 IPR027417 -
Spst3g04479 977 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 290 709 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04479 Spst-Chr3 96374004 96381226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04479 278 525 Core DNA Replication Machinery Family AT1G21690 24.800 2.42e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04479 - - pcin:129308301 1095.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04479 3 96374004 96381226 Spst3g04479 3 96374004 96381226 ECH
Spst3g04479 3 96374004 96381226 Spst9g02067 9 41924865 41928820 PCT