Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04478 ATGGCTTCGAGCGAGGGGTTTCTGACTGATGGACAGAGGGAACTGCTAAAAATTGCAAGTCAAAATGCGGAGAATCTGTCTTCATCTCCGAAATCTCCTTCGTCCTTGCTTTCTGACCATCATGTGAAAGCTCCTGCTGGTGGTAAGGCACAAACCGCTGGGATAGCTGTGAGGCATGTGCGTCGGTCACACTCAGGGAAGTATGGGCGGGTGAAGAAAGATGGTGCTGGTGGTAAGGGCACTTGGGGGAAATTGCTTGATACTGATATTGTTTCTCATATAGATAGGAATGATCCAAATTATGACAGCGGCGAGGAACCCTATCAGCTGGTTGGATCTACTGTTACTGACCCCTTGGATGATTTCAAGAAAGCAGTGGTATCCATCATAGAGGAATACTTTAGTAATGGAGATGTGGAATTGGCAGCATCTGACCTCAGAGAACTTGGCTCAAGTGAATACTATCCATACTTCATTAAACGCCTTGTGTCCATGGCTATGGACAGGCATGATAAGGAGAAAGAAATGGCTTCTGTTCTGCTTTCAGCATTGTATGCTGATGTTATCAGCCCTGCACAGATTAGGGATGGGTTTTTTATTCTTCTCGAATCTGCAGATGATCTTGCTGTGGATATACTTGATGCAGTTGATATCCTTGCATTATTCTTGGCACGGGCTGTTGTTGATGACATTCTTCCTCCAGCCTTTCTTGCCAGGGCAATGAAGGCTCTTCCAGAGTCTTCCAAGGGAGTTCAGGTAATCCAGGTTGCTGAAAAGAGTTATCTCTCAGCTCCACACCATGCAGAGCTTGTGGAAAGGCGATGGGGTGGTAGCACTCACATAACTGTTGAAGAAGTGAAGAAGAAGATAGCTGATTTACTTAGAGAATATGTGGATAGTGGTGAGACATTGGAAGCCTGTAGGTGTATACGTGAGTTGGGGGTTTCATTCTTCCATCACGAGGTTGTTAAGAGGGCTCTGGTACTTGCCATGGAGATTCGTTCGGCAGAACCTCTAATGTTGAAATTATTAAAAGAAGCAGCAGAAGAAGGACTTGTTAGTTCCAGCCAAATGGTGAAGGGGTTTTCTCGTTTGGCAGAATCCCTAGATGATCTTGCTCTTGATATTCCATCAGCTAAGGCATTGTTTCAGTCATTTGTCCCCAAGGCAATTTCGGAAGGATGGCTTGACGCTTCACTTACTAATCCTGCAACTGAAGATGGGGAAATACAAGTTGAAGATGAGCAGGTGAGGAATTACAAAAAGGAATCAGTAACTATAATTCATGAGTATTTTCTTTCTGATGACATTCCTGAGCTGATTCGAAGTCTTGAAGATCTTGGAGCTCCCGAGTACAATCCGATATTTTTGAAGAAACTGATAACTCTTGCTATGGACCGAAAGAACAGAGAAAAGGAAATGGCATCTGTACTGCTATCTGCACTTCATATAGAGATATTTTCAACTGAGGATATAGTTAATGGTTTTGTCATGCTTCTGGAAACTGCGGAAGATACAGCACTGGATATACTGGATGCATCAAATGAGCTTGCTCTGTTTTTAGCTCGGGCTGTTATTGACGATGTGTTGGCCCCACTGAATTTGGAAGAAATTGGCAGCAGGTTACCACCAAAGTGTAGTGGTAGTGAAACTGTGCGTATGGCTCGGTCTCTAATAGCTGCTCGTCATGCTGGGGAGAGGCTATTGAGATGCTGGGGTGGAGGCACTGGGTGGGCTGTGGAGGATGCCAAGGACAAGATCATGAAGCTCTTGGAAGAATACGAGAGTGGAGGGGTTGTCAGTGAAGCTTGCCAATGTATCCGTGACCTGGGAATGCCTTTCTTTAACCACGAGGTAGTGAAGAAAGCTTTGATTATGGCCATGGAGAAAAAGAATGATAGAATGCTAGATCTACTGCAGGAGTGCTATAGTGAGGGCCTGATCACCATTAATCAGATGACTAAAGGTTTCACCCGAATAAAGGATGGTCTTGATGATCTGGCTCTGGACATTCCTAACGCAAAGGAGAAATTTGGCTTCTATGTGGAGCATGCTCAGTCGAAGGGCTGGCTTCTACCATCATTTGATTCGCCTGCTACAGAAGCCTAA 2109 0.4481 MASSEGFLTDGQRELLKIASQNAENLSSSPKSPSSLLSDHHVKAPAGGKAQTAGIAVRHVRRSHSGKYGRVKKDGAGGKGTWGKLLDTDIVSHIDRNDPNYDSGEEPYQLVGSTVTDPLDDFKKAVVSIIEEYFSNGDVELAASDLRELGSSEYYPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPAQIRDGFFILLESADDLAVDILDAVDILALFLARAVVDDILPPAFLARAMKALPESSKGVQVIQVAEKSYLSAPHHAELVERRWGGSTHITVEEVKKKIADLLREYVDSGETLEACRCIRELGVSFFHHEVVKRALVLAMEIRSAEPLMLKLLKEAAEEGLVSSSQMVKGFSRLAESLDDLALDIPSAKALFQSFVPKAISEGWLDASLTNPATEDGEIQVEDEQVRNYKKESVTIIHEYFLSDDIPELIRSLEDLGAPEYNPIFLKKLITLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFVMLLETAEDTALDILDASNELALFLARAVIDDVLAPLNLEEIGSRLPPKCSGSETVRMARSLIAARHAGERLLRCWGGGTGWAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALIMAMEKKNDRMLDLLQECYSEGLITINQMTKGFTRIKDGLDDLALDIPNAKEKFGFYVEHAQSKGWLLPSFDSPATEA 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04478 702 FunFam programmed cell death protein 4 409 563 - -
Spst3g04478 702 FunFam Programmed cell death protein 4 271 406 - -
Spst3g04478 702 Pfam MA3 domain 286 397 IPR003891 -
Spst3g04478 702 Pfam MA3 domain 584 691 IPR003891 -
Spst3g04478 702 Pfam MA3 domain 122 233 IPR003891 -
Spst3g04478 702 Pfam MA3 domain 421 530 IPR003891 -
Spst3g04478 702 ProSiteProfiles MI domain profile. 419 540 IPR003891 -
Spst3g04478 702 FunFam programmed cell death protein 4 113 264 - -
Spst3g04478 702 SUPERFAMILY ARM repeat 579 696 IPR016024 -
Spst3g04478 702 MobiDBLite consensus disorder prediction 20 55 - -
Spst3g04478 702 SUPERFAMILY ARM repeat 120 279 IPR016024 -
Spst3g04478 702 PANTHER PROGRAMMED CELL DEATH 4 5 696 IPR039778 GO:0045892
Spst3g04478 702 Gene3D - 114 262 - -
Spst3g04478 702 Gene3D - 409 563 - -
Spst3g04478 702 SUPERFAMILY ARM repeat 418 575 IPR016024 -
Spst3g04478 702 SUPERFAMILY ARM repeat 282 403 IPR016024 -
Spst3g04478 702 SMART ma3_7 122 233 IPR003891 -
Spst3g04478 702 SMART ma3_7 420 531 IPR003891 -
Spst3g04478 702 SMART ma3_7 286 397 IPR003891 -
Spst3g04478 702 SMART ma3_7 583 692 IPR003891 -
Spst3g04478 702 Gene3D - 272 404 - -
Spst3g04478 702 Gene3D - 570 698 - -
Spst3g04478 702 ProSiteProfiles MI domain profile. 121 242 IPR003891 -
Spst3g04478 702 ProSiteProfiles MI domain profile. 285 406 IPR003891 -
Spst3g04478 702 MobiDBLite consensus disorder prediction 20 36 - -
Spst3g04478 702 ProSiteProfiles MI domain profile. 582 701 IPR003891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04478 Spst-Chr3 96364803 96367951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04478 586 682 Eukaryotic Initiation Factors Gene Family AT5G57870 33.000 1.43e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04478 - - gmx:100784244 1296.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04478 3 96364803 96367951 Spst3g04478 3 96364803 96367951 ECH