Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04477 ATGGTGGCTTCGGAGGAAGTATTCCCGTGGCTGAAGTCGCTGCCGGTAGCGCCGGAGTACCGCCCAACCGTGGCGGAGTTCCAAAACCCTATAGCCTATATCTCCAAAATCGAGAAAGAAGCCTCTCAATATGGAATCTGCAAGATCATTCCCCCGCTTCCCCCTTCCCCCAAGAAAACCGCAACTGCCAACCTCACGCGCTCCCAACCTACCTTCACCACGCGCCAGCAGCAGATCGGTTTCTGCCCCCGCCGCGCGCAGCCGGTGCGACGCCGCGTCTGGCACAGCGGCCACCACTACTCTCTCCGCGAATTCGAAGCCAAGGCTAAGGCCTTCCACAAAACCTACCTCAAGAAAAACAAACCCAAACCCTCGCCTCTCGAACTCGAAACGCTCTACTGGAAAGCCACCTTAGACAAACCCTTCTCCGTCGAATACGCCATCGACATGCCTGGTTCCGCGTTTAGCCCCCTCCGTGCTTCCCGCGATGCCAATTACGTTGGTGACACCGCCTGGAACATGAGGGCGGTTTCGCGGGGGAGTGACTCGCTGCTTAGGTTCATGAAGGAGGAAATTCCCGGCGTGACTTCACCTATGGTCTACGTGGCGATGTTGTTCAGCTGGTTCGCGTGGCATGTGGAGGACCACGATTTGCATAGCTTGAACTACCTCCATTTTGGAGCTCCCAAGACTTGGTACGGCGTGCCTAGGGACGCTGCCGTCGCGTTCGAGGAGGTTGTCAGAGTTCATGGCTACGGCGGAGAGATTAACCCTCTCGTTACCTTTGCTATTCTTGGCGAGAAAACCACGGTAATGTCGCCGGAGGTTTTTGTTAGTGCCGGGTTTAACTGTGGAGAGGCGGCTAACATTGCGACACCTGAATGGTTAAGGTTTGCGAAAGATGCTGCTATTCGGAGGGCTTCCATTAATTATCCTCCCATGGTGTCACATTTCCAGTTGCTTTATGACCTTGGCGTTGCTTTGTGTTCAAGAATCCCTGGAGGCATTAATGCTGAACCGCGGAGTTCTCGGCTTAAATATAAGAGAAACTGTGAAGGAGAAACTGTAATTAAAGAACTATTTGTACAGGATGTGGTAGAGAACAATGATTTGCTTCACACACTTAGCAAAGAATCTGCTATAGTACTTCTTCCTCGTAGCTCTTCTGACTTTTCTGTTTGCTCAAAATTACGCATTGGATCACAACAACTAAAAGTGAACCCTGACTCTTCTGTCAATGTATACAATTATGAGGGAATGGATTCCTCAGATTTTATTTCTGATGACCTCATGTTCAACAGGAATCATGGAATAAAACCGGTAAAGAATTTTTATTCTGTAAAAGAGAAGTTTGTTACATTGTGTGAGAGGAATAGGGTTTTGCCATTTAGTCCGAATGGGAACTTATACACTTCAAGTTCAAAAACATTGCAAAGAGACAGTGAAAAGGAAACAGATCAAGGAGATGGATTATCAGATCAGAGACTATTTTCATGTGTCACTTGTGGAATATTATGCTTTTCCTGTGTTGCTATTGTGCAACCTAGAGAACCAGCAGCTACATACCTTATGTCAGCTGATTGTAGTTTTTTTAATGATTGGATTGTTGGTTCTGGAGTAACTAGCAATAAATTTTCAGGTGCATATAAAGATGCATGTATTCCGAAGCCAAGAACATATACAGACCTGTATGTGAAAGCTGAGCTTCATGTACAGCTTTGTTCTTGTAGTAGTTTTGAATCCAAGAGTGGCGTGCCATGTGCTTATTATTCTTTACATAATGAGAGAGAAGAAATATGCATGAATCTGCAGAGCCTTTATGGTTGGACAAAGCTAAATGCCCAGCATGATTCAAATGGTAATTCCGTTCAATCTGTTGAGCACCATGCACAGATTGCCGATCAAAATTATGTGGAGGCTTTAAATTCTGAAAGAGAAAAAGGCAATTCAGCTCTTGCATTATTGGCATCGGCATATGGAAATTCTTCTGACTCTGAGGAAGGTCAGGGGGGATTAGATATTGCACTTGATGGCGATGAATTGAATGTAATCAACCATCCAGCCACAAATGGATCTCAGGAGATGTCTAGTTTGCCTTCTCAGTTTCAAGATTCCCATGATAGTCCCATGGGTAGAGTCATTAGGCTTGATAAAGGAGATGATATTCCTTCAAGAAGAATAGACAATTATGAGTATTATATGCATAAGAGAGTTGAGCGCATTATGACTCCTTTTGACTACTCTGTTAAGTCAGAAGATGATGACAACACTTCAGGGGTGGCATTTAGAAATACCTGGGCTGTGCCCCATTCTACTTTGAATTGTTCTGAAGATACTCATGCTGGTGAAGACTCATCTAGGATGCATATCTTCTGTTTAGAGCATGCTGTAGAAGCAGAGCAGCAACTTCGCCCAATTGGAGGAGCGCACATATTGCTCCTATGTCATCCAGATTTTCCAAAGATAGAGGCTGAAGCAAAGTTGGTCGCAGAGGAACTGGAGATTGATTATCTATGGAAGACTACTATATACAGGCAATCCAAAAGGGAAGATGAGGAGAGGATCCAATCAGCTCTGGATAGTGAGGAAGCTATTCCTGGAAATGAGGACTGGGCTGTAAAGCTGGGAATCAATCTCTTTTATAGTGCCAATCTTAGCCGCTCAGCACTTTACAGTAAGCAGATTCCATACAATTCTGTTATATATAATGCATTTGGTCAAAGCTCTCCAGCAAGCTCACATACAGAGCCCAAGGTCTATCAGAGAAGGACCAACAGGCAGAAGAAGGTAGTTGCTGGGAAATGGTGTGGTAAAGTTTGGATGTCCAATCAAGTCCATCCCCTTTTAGCAAAAAGAGACTCCAAAGATGTTGAGGATGAAAAAGCCTTACATGGGTGGCCATTGCCTCATGAGAAAATTGAGAGATCAGAAAGTAACCTCAAATGCAAAACTTCGACTAGAAAATCTGGTATGAAATGGAGAAACTCTGTTCAGAAAGGAGTTAGCAGGGAAGAAAGTTTTTCTGAGAGAGATTGTCTTTCAGATAATTCGATTGAAGATAAATCCAATAAATATCAAAGGAGGATTCTTGGTAGTAAGCGAACCAGGCATATTGAGAGAGATGATACTGCTTCAGATGGGGATTATTCTCCTCTGCCCCATCATAGAAAGCCTATAAACAAGCATTCAGAATCTAGTGAAAATAGTGCAACTTCAGATGATTTGCTGGATGATGATTCTTGTATACAGCATCGGAGGAAGGCTAATACCAATAAAGCTAAATTTATTGACAGTGATGTATTTTCAGATGATACAATGGACTATGGTTCTGATTGGTCACGTAGGGAAGACCTTGGCAACGAGCAAGATGCTATTTCTGATGATTCGTTGGGTGTTGGTTCTCTTCAGATGCGCAGAATGACTCATAAAGGCAAGTATGAAGAATTCATTGCTGAAGAAGACGTGATTTGTGATGATCAAAGGGAGGTTGGTTTTTGGAATCAGAAAGGGAAGATATCTAAAGGCAGACAAAGATCTGTTTCTGCAAAAAATATCAATCAGCTGGAGCACGAGAAGCAGAAGCAGCAACAAAGGAATCCAAGAAGCAGGCAAGATAAGCACCTGGCAGCAGAGAATATTATTTCTGATGACCAACTGGAGGGTAATTTTTGCAAGTTTCAAAGAAGGATTCCTAAAAACAGACAAGCCATGTGCATCAATGAGGAAGATGTAATGTCTGATGATCGCTTGAAGGATCTCTTTCAGAAACCCAAACGAAGTACTCGAAGGAGCAGGAAAGATAAATACAATGATAAAGACGTTATGAATGATGTGGCTGAAAATAATTTTCATATTCTGTATAGAACTCGTAAAAGGAAGCAAGCTAAAGGCATGGATGAGGACAATATAAATTCAGATGATCAAATGGAAGATATTTTTCATCAGCAGCACAAAAGAACTCTTCAAAGTAAGAAATCCAAATCACAGATTCTTCAACAAATGAAACAAACTAATCCTCTCCGTGTGAGAAACAAGACATCCCGTCCTGTGAAACAAGGTATGCTAATGAAATCAAAGACTGCTCGGCAGGCAAAGAGTCAATCTGGTAACTCCAAAGGCTTAACAGTACTTGTGGAAGAGGTGGAAGATGGTGGACCTCGCACACGACATAGGAAGAGAGTCCTAAAAAATCAAGAGTCTGAAGGAAAATTAAAAGAAAAGGAAATCAAAAGGGAAAAGGTGAAGAATACAACAGCAGCAAAGGTTTCAGTTGGCCATGCCAAAATAAAGGATGAGGAATCAGAATATCAGTGTGACATTGAGGGTTGTACCATGAGTTTTGGGTCTAAACAGGAGCTGTTGCAACATAAGAGAAACATTTGTCCTGTGAAAGGATGTGGAAAGAAGTTTTTTTCTCACAAATATCTAGTGCAGCATCGACGAGTTCATGAGGATGACCGCCCTTTGAAGTGCCCTTGGAAAGGATGCAAGATGACTTTCAAGTGGGCATGGGCACGCACTGAGCACATTAGAGTTCACACTGGGGCTCGTCCTTATGTGTGTGCTGAGCCAGGGTGTGGGCAAACGTTTAGATTTGTTTCTGATTTCAGTCGTCATAAGCGAAAGACCGGTCATTCAACAAAGAAGAATTGTTGA 4656 0.4319 MVASEEVFPWLKSLPVAPEYRPTVAEFQNPIAYISKIEKEASQYGICKIIPPLPPSPKKTATANLTRSQPTFTTRQQQIGFCPRRAQPVRRRVWHSGHHYSLREFEAKAKAFHKTYLKKNKPKPSPLELETLYWKATLDKPFSVEYAIDMPGSAFSPLRASRDANYVGDTAWNMRAVSRGSDSLLRFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHFGAPKTWYGVPRDAAVAFEEVVRVHGYGGEINPLVTFAILGEKTTVMSPEVFVSAGFNCGEAANIATPEWLRFAKDAAIRRASINYPPMVSHFQLLYDLGVALCSRIPGGINAEPRSSRLKYKRNCEGETVIKELFVQDVVENNDLLHTLSKESAIVLLPRSSSDFSVCSKLRIGSQQLKVNPDSSVNVYNYEGMDSSDFISDDLMFNRNHGIKPVKNFYSVKEKFVTLCERNRVLPFSPNGNLYTSSSKTLQRDSEKETDQGDGLSDQRLFSCVTCGILCFSCVAIVQPREPAATYLMSADCSFFNDWIVGSGVTSNKFSGAYKDACIPKPRTYTDLYVKAELHVQLCSCSSFESKSGVPCAYYSLHNEREEICMNLQSLYGWTKLNAQHDSNGNSVQSVEHHAQIADQNYVEALNSEREKGNSALALLASAYGNSSDSEEGQGGLDIALDGDELNVINHPATNGSQEMSSLPSQFQDSHDSPMGRVIRLDKGDDIPSRRIDNYEYYMHKRVERIMTPFDYSVKSEDDDNTSGVAFRNTWAVPHSTLNCSEDTHAGEDSSRMHIFCLEHAVEAEQQLRPIGGAHILLLCHPDFPKIEAEAKLVAEELEIDYLWKTTIYRQSKREDEERIQSALDSEEAIPGNEDWAVKLGINLFYSANLSRSALYSKQIPYNSVIYNAFGQSSPASSHTEPKVYQRRTNRQKKVVAGKWCGKVWMSNQVHPLLAKRDSKDVEDEKALHGWPLPHEKIERSESNLKCKTSTRKSGMKWRNSVQKGVSREESFSERDCLSDNSIEDKSNKYQRRILGSKRTRHIERDDTASDGDYSPLPHHRKPINKHSESSENSATSDDLLDDDSCIQHRRKANTNKAKFIDSDVFSDDTMDYGSDWSRREDLGNEQDAISDDSLGVGSLQMRRMTHKGKYEEFIAEEDVICDDQREVGFWNQKGKISKGRQRSVSAKNINQLEHEKQKQQQRNPRSRQDKHLAAENIISDDQLEGNFCKFQRRIPKNRQAMCINEEDVMSDDRLKDLFQKPKRSTRRSRKDKYNDKDVMNDVAENNFHILYRTRKRKQAKGMDEDNINSDDQMEDIFHQQHKRTLQSKKSKSQILQQMKQTNPLRVRNKTSRPVKQGMLMKSKTARQAKSQSGNSKGLTVLVEEVEDGGPRTRHRKRVLKNQESEGKLKEKEIKREKVKNTTAAKVSVGHAKIKDEESEYQCDIEGCTMSFGSKQELLQHKRNICPVKGCGKKFFSHKYLVQHRRVHEDDRPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSTKKNC 1551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04477 1551 PANTHER LYSINE-SPECIFIC DEMETHYLASE 9 281 - -
Spst3g04477 1551 Coils Coil 1178 1205 - -
Spst3g04477 1551 Coils Coil 1397 1417 - -
Spst3g04477 1551 ProSitePatterns Zinc finger C2H2 type domain signature. 1491 1513 IPR013087 -
Spst3g04477 1551 ProSiteProfiles JmjN domain profile. 17 58 IPR003349 -
Spst3g04477 1551 Pfam JmjC domain, hydroxylase 199 284 IPR003347 -
Spst3g04477 1551 MobiDBLite consensus disorder prediction 1185 1206 - -
Spst3g04477 1551 Gene3D Classic Zinc Finger 1457 1543 - -
Spst3g04477 1551 MobiDBLite consensus disorder prediction 1353 1374 - -
Spst3g04477 1551 MobiDBLite consensus disorder prediction 1359 1374 - -
Spst3g04477 1551 ProSiteProfiles JmjC domain profile. 166 307 IPR003347 -
Spst3g04477 1551 SUPERFAMILY beta-beta-alpha zinc fingers 1499 1543 IPR036236 -
Spst3g04477 1551 MobiDBLite consensus disorder prediction 977 1012 - -
Spst3g04477 1551 MobiDBLite consensus disorder prediction 983 1002 - -
Spst3g04477 1551 FunFam Probable lysine-specific demethylase ELF6 1486 1515 - -
Spst3g04477 1551 ProSitePatterns Zinc finger C2H2 type domain signature. 1461 1483 IPR013087 -
Spst3g04477 1551 ProSiteProfiles Zinc finger C2H2 type domain profile. 1519 1550 IPR013087 -
Spst3g04477 1551 ProSiteProfiles Zinc finger C2H2 type domain profile. 1489 1518 IPR013087 -
Spst3g04477 1551 SMART c2h2final6 1489 1513 IPR013087 -
Spst3g04477 1551 SMART c2h2final6 1519 1545 IPR013087 -
Spst3g04477 1551 SMART c2h2final6 1459 1483 IPR013087 -
Spst3g04477 1551 SMART c2h2final6 1436 1458 IPR013087 -
Spst3g04477 1551 ProSitePatterns Zinc finger C2H2 type domain signature. 1521 1545 IPR013087 -
Spst3g04477 1551 SMART cupin_9 166 307 IPR003347 -
Spst3g04477 1551 Gene3D Cupin 10 311 - -
Spst3g04477 1551 MobiDBLite consensus disorder prediction 1024 1077 - -
Spst3g04477 1551 FunFam Probable lysine-specific demethylase ELF6 1516 1545 - -
Spst3g04477 1551 Pfam jmjN domain 18 51 IPR003349 -
Spst3g04477 1551 SUPERFAMILY beta-beta-alpha zinc fingers 1459 1495 IPR036236 -
Spst3g04477 1551 SMART JmjN_1 16 57 IPR003349 -
Spst3g04477 1551 ProSiteProfiles Zinc finger C2H2 type domain profile. 1459 1488 IPR013087 -
Spst3g04477 1551 MobiDBLite consensus disorder prediction 1024 1063 - -
Spst3g04477 1551 MobiDBLite consensus disorder prediction 1170 1206 - -
Spst3g04477 1551 SUPERFAMILY Clavaminate synthase-like 180 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04477 Spst-Chr3 96350139 96361859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04477 1385 1549 C2H2 Transcription Factor Family AT3G48430 63.277 2.62e-66 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst3g04477 JmjC 4.6e-18 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04477 - - gmx:100775813 1862.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04477 3 96350139 96361859 Spst3g04477 3 96350139 96361859 ECH
Spst3g04477 3 96350139 96361859 Spst2g00306 2 2373292 2374384 PCT
Spst9g02075 9 42240901 42243198 Spst3g04477 3 96350139 96361859 PCT