Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04476 ATGGAAGGCTCTGAATCCGATTCTGTGCCACTTGCCATTTCCAATGGCGAAGATCCCCAATTGGGGGCTCATTCTTCCCCGCTTTCTCCTCCTCTTCCTCAACTGTCAGATCTCAATCACGCGGCGGAGCACGAGGCACTCTCTGGGGAGCTTCAGAGCAAGTTGGATTTGAAGGGTGATGATGAGAGTGAAGATGAACGTCAGGAGAAAGTTTCCTACTTGAACAACGGTGGAGGAGTTTGCGACGAAGAAACTGCTAAGGGTGATGAAGATAGTAAGGGTTGGGAGACAAATAGTTGGAATGAGGAAGTGGGTGTTCACGTCGATGCTGATGAATATGGAGTGGAGAAGAAGGAAGAGAGAAACAGTGATGTAACTCACCACTACCCTTTGAGGCCTGAAGCAGAAGATTGTGCATTTTATATGAAAACTGGGAATTGCAAGTTTGGGTTTAACTGCAAGTTTAATCACCCCATTAGGAGGAAAACTCAGGCTGCTAGAGAGAAGTCCGGAGAAAGAGAAGAAACCTCAGAGAGATCAGGCACAACAGAATGCAAGTTTTATCAAAGATCTGGGGGTTGCAAGTTTGGAAAGTCTTGTAAATATAATCACACAAGAGGAAAATTTTCAACACCACCAGTTTTAGAACTTAACTTTCTTGGTCTGCCTATTCGTCAGGGGGAGAGAGAGTGCCCCTTTTACATGCGTACTGGCTCTTGCAAATTTGGAGCAAACTGCAAGTTCAACCATCCTGACCCGACAACTGTTGGAGGATGTGATCCTCCTTCGTTTGGTAACGGAGGGTCTATTTCATTACAAGGTGTATCACAACCATCTGTACCCTCCTGGTCTTCTCCAAGAACATTAAACGAAACATCCCCTTTTGTGCCAATGATGCTTTCACCTACTCAAGGTGTTTCCGCCCAAAGTTCTGATTGGAATGGATATCAGGCATCTGTCTACCTTCCTGAGAGGAACATGCATCCACCTTCTACATTTGTCTTGAGCAACCCTGCAGTCGATACAAATGTTTACATGCACCATCAAAAGCAGATGTCTGTGGAAGAGTTTCCTGAAAGACCTGGTGAACCTGAATGTAGCTACTTCCTAAAAACTGGAGATTGCAAGTTTAAATCTAATTGTAAATTTCACCATCCAAAGAATCGAATTGCAAGATTACCTCCATGCAACCTTAGTGACAAGGGTCTTCCTTTGAGACCTGATCAAAGTGTCTGCTCCCATTACAGTCGCTATGGAATTTGTAAATTTGGACCAGCTTGTAAGTTTGACCACCCGATAAACTTGCAGCCATTAATGATGTCTGGACTTGGTGAGCAGTCATACTCAAATTCAGCTGGTGTGGAGGAAGCTGGGATAGGCGAAAGTACAGGTGAAACTGATGCAACAATTCAGCAATCTGTGTAA 1425 0.4449 MEGSESDSVPLAISNGEDPQLGAHSSPLSPPLPQLSDLNHAAEHEALSGELQSKLDLKGDDESEDERQEKVSYLNNGGGVCDEETAKGDEDSKGWETNSWNEEVGVHVDADEYGVEKKEERNSDVTHHYPLRPEAEDCAFYMKTGNCKFGFNCKFNHPIRRKTQAAREKSGEREETSERSGTTECKFYQRSGGCKFGKSCKYNHTRGKFSTPPVLELNFLGLPIRQGERECPFYMRTGSCKFGANCKFNHPDPTTVGGCDPPSFGNGGSISLQGVSQPSVPSWSSPRTLNETSPFVPMMLSPTQGVSAQSSDWNGYQASVYLPERNMHPPSTFVLSNPAVDTNVYMHHQKQMSVEEFPERPGEPECSYFLKTGDCKFKSNCKFHHPKNRIARLPPCNLSDKGLPLRPDQSVCSHYSRYGICKFGPACKFDHPINLQPLMMSGLGEQSYSNSAGVEEAGIGESTGETDATIQQSV 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04476 474 SUPERFAMILY CCCH zinc finger 131 160 IPR036855 GO:0046872
Spst3g04476 474 MobiDBLite consensus disorder prediction 162 181 - -
Spst3g04476 474 SUPERFAMILY CCCH zinc finger 365 389 IPR036855 GO:0046872
Spst3g04476 474 Gene3D - 92 170 - -
Spst3g04476 474 SMART c3hfinal6 225 252 IPR000571 GO:0046872
Spst3g04476 474 SMART c3hfinal6 360 387 IPR000571 GO:0046872
Spst3g04476 474 SMART c3hfinal6 406 433 IPR000571 GO:0046872
Spst3g04476 474 SMART c3hfinal6 132 159 IPR000571 GO:0046872
Spst3g04476 474 SMART c3hfinal6 179 206 IPR000571 GO:0046872
Spst3g04476 474 MobiDBLite consensus disorder prediction 8 33 - -
Spst3g04476 474 PANTHER PROTEIN PHOSPHATASE RELATED 41 453 - -
Spst3g04476 474 ProSiteProfiles Zinc finger C3H1-type profile. 132 160 IPR000571 GO:0046872
Spst3g04476 474 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 408 432 IPR000571 GO:0046872
Spst3g04476 474 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 362 387 IPR000571 GO:0046872
Spst3g04476 474 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 136 158 IPR000571 GO:0046872
Spst3g04476 474 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 227 251 IPR000571 GO:0046872
Spst3g04476 474 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 181 204 IPR000571 GO:0046872
Spst3g04476 474 ProSiteProfiles Zinc finger C3H1-type profile. 360 388 IPR000571 GO:0046872
Spst3g04476 474 Gene3D - 404 452 - -
Spst3g04476 474 Gene3D - 173 259 - -
Spst3g04476 474 Gene3D - 341 402 - -
Spst3g04476 474 SUPERFAMILY CCCH zinc finger 404 432 IPR036855 GO:0046872
Spst3g04476 474 MobiDBLite consensus disorder prediction 162 182 - -
Spst3g04476 474 MobiDBLite consensus disorder prediction 1 102 - -
Spst3g04476 474 MobiDBLite consensus disorder prediction 268 287 - -
Spst3g04476 474 ProSiteProfiles Zinc finger C3H1-type profile. 225 253 IPR000571 GO:0046872
Spst3g04476 474 MobiDBLite consensus disorder prediction 83 97 - -
Spst3g04476 474 SUPERFAMILY CCCH zinc finger 228 252 IPR036855 GO:0046872
Spst3g04476 474 SUPERFAMILY CCCH zinc finger 181 209 IPR036855 GO:0046872
Spst3g04476 474 ProSiteProfiles Zinc finger C3H1-type profile. 179 207 IPR000571 GO:0046872
Spst3g04476 474 ProSiteProfiles Zinc finger C3H1-type profile. 406 434 IPR000571 GO:0046872
Spst3g04476 474 MobiDBLite consensus disorder prediction 43 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04476 Spst-Chr3 96340837 96344661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04476 126 466 C2H2 Transcription Factor Family AT3G02830 38.950 2.78e-74 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Spst3g04476 zf-CCCH 7.6e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04476 - - vun:114178095 823.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04476 3 96340837 96344661 Spst9g02076 9 42292388 42297813 ECH
Spst3g04476 3 96340837 96344661 Spst3g04476 3 96340837 96344661 ECH
Spst3g04476 3 96340837 96344661 Spst9g02076 9 42292388 42297813 PCT