Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04473 ATGCTTCATTCACCACCTTCTTTCCTGGATTCCCTCAAGGCTCTTGAGGCTGACATCCAACACGCCAATGTGCTGGCAGCTTCTATGCCAAAGGGGAAGGGTGAGGCTTGCCTTCAAATGAATCACTTTAATCTTTTCCACGTAGTTGTGTATAAGGTGCACACAAATGGAAAGTCAGATATGTATTGTAGTGAAAGAAAAGCAACCATAAGGGAGTTCTACAGTGTTATATTACCTTCACTCCAGCGTCTTCATGGTGATCTAGTAGAAGCAAACAGGGTTCAAGAAAATGAACAAAACATTGAGATGATAACCAGGAATGAGAAGGATAAGAGGAAGGCTTCAGATTTGGACTGGGAGGGAGAACATGAGTGTGGCATTTGCTTAGAGTCTTCCACCAAAATGGTTTTGCCTAATTGCTGCCATGCTATGTGTATAAATTGTTACACTGACTGGAACACAAGGTCAGAATCTTGTCCATTTTGCCGAGGAAGTTTAAAGAGAGTTAATTCGGGGGATTTGTGGGTTCTAACATGTAGTAGAGATGTGATTGATATGCAAACCATACACAGAGAAGATATGTTGCGTCTCAATCTCTTTGTAAATAATCTTCCCGAATATACCCCGGATGCTCTTTTTCTTGTGTACTACGAGTACTTATTTTAA 666 0.4099 MLHSPPSFLDSLKALEADIQHANVLAASMPKGKGEACLQMNHFNLFHVVVYKVHTNGKSDMYCSERKATIREFYSVILPSLQRLHGDLVEANRVQENEQNIEMITRNEKDKRKASDLDWEGEHECGICLESSTKMVLPNCCHAMCINCYTDWNTRSESCPFCRGSLKRVNSGDLWVLTCSRDVIDMQTIHREDMLRLNLFVNNLPEYTPDALFLVYYEYLF 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04473 221 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 172 IPR013083 -
Spst3g04473 221 SMART ring_2 125 162 IPR001841 -
Spst3g04473 221 PANTHER RING FINGER PROTEIN 41, 151 7 219 - -
Spst3g04473 221 Pfam Zinc finger, C3HC4 type (RING finger) 122 168 - -
Spst3g04473 221 SUPERFAMILY RING/U-box 108 168 - -
Spst3g04473 221 ProSitePatterns Zinc finger RING-type signature. 140 149 IPR017907 -
Spst3g04473 221 ProSiteProfiles Zinc finger RING-type profile. 125 163 IPR001841 -
Spst3g04473 221 FunFam RING/U-box superfamily protein 106 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04473 Spst-Chr3 96324257 96325504 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04473 123 184 RAD5 or RAD16-like Gene Family AT5G43530 42.188 3.28e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04473 - - qsa:O6P43_022602 307.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04473 3 96324257 96325504 Spst3g04473 3 96324257 96325504 ECH