Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04464 ATGCCAACCGCGTCCCGCTTGTTCGTGATCCCAACGACGAGGCCCATCCTCGCAAAAACCATCGTCTTCATGTCCTCCTGTTCAGCTCGCAGGCTCGAACCGTGCGAGCCGTCACCGTCCCCTGCGTGCGCGGAAGAAGAATCCCGAAACGTGAGGGTTTGGGCGTGGTGGGACTTCAAGAACTGCCCCGTACCCTCGGATTTCGACGCTTCCAAAGTCACTCCGACAATAATGGAAGCAGTGAGAGCAAACGGAATCAAAGGCCCTCTCAACATCACCGCTTTCGGCGACGTTCAACAGCTCCCCCGGGCCCACCAGGAAGCCCTCGTGTACACAGGCGTTCGCTTCATCCATGTCTCCAACAGGGAAAGAAACAGTGCCGATATTCTTGTTGACCTTATGTATTGGGTTTCGCAGAACCCTCCACCGGCGCACATATTTATGATATCCGGTGATATAGACTTCGCTGGTACGTTACACCGTTTGAGAATGAGTAATTACAATATTTTGCTCGCTACGCCCAAGAAAACTCCTGATGTTCTCCTCCACAGTGCTGCCACTATTGCCTGGCACTGGTATTCGATGCTCAAGGGACAAAATCTTACTGGAAAGGTCCTCAACCATCCTCCTGATGGGCCTTTTGGCTCTTGGTATGGAAGCTTCAAGGAGGCTGTGACGTTGGCCGATCTGCCGGCGGTTGAGGTACCGGTCACGGTTGCAGCTCCGCAGGTTACCACTTTGCCCAATGTGGAGGTCTATGGGCCTTCCCTGAGCTCGGTTCCTAAGTCAGTTGCGAGGCAGGTTAGGCATATATTGAGTTTACATCCAAAAGGGTTAGACATTTCTAATCTTCGTGCTGAGTTGGTGAAATGTGATGTGCGTTTGGAGAAGAATTTATATGGACATAAGAAGTTTTCCCGCTTTCTGATGTCGTTGCCGCGCGTAGAGGTTCGGGATGGTGGTGATGGTTCTTTTACTGCGCATTTGGTTCCTTCGAAATCCATGGAACCATCTGAGAACAGATACATTGAATCAGCAATTTCTGGTGCTAAGAACGAGGAAGCAGGATGTGCAGCGGCTCCAGAGCTAAATGGTCAGGGTAAAAGTAAGGTGAGGAATGCTGATGGGAAATTGTCAATTGCCTCGGACTTTGAAAGTAGCTTGGGTGAAGATTTAACATCATTTCAACCGGGGCGGTCACAAGGGAGACCTGTTGAGGAAAGTGAGTTGCGGAAGTCTTCTCTGGCTTGTGACTGGTTTGTGGATCTAGCTAGTGCTCCACAGTCAGAAACTCAACTGCTACACAAGGACACCAAAGATTCTAAAACTAAGATGGATTCCCTAAAAATGGGTTCTAAAAAATTGTCTGATAATGACACTGTTAGGTCTAAGGTTGCAAGCATGGAAAAACATACCACTAAAGAGAGTAACTCTGCTGGAAATGATCAGTCAACGGTGGAAAACAATGTTATGGCAAATTACGAGTCTGGAAATTTTGAAGCAAAAAATAAATGTGAGAATCCGGTAAAGGAGATTGATGAAGTTTTTCGTGGCTTATCTTTACCAGTTGATGGCGCTCAGGCTGTCCAAACGCCTGGCGGAAGTGCTGAAACTAATAACAGAAGTCCAACACTGTTTCACTGGATTAGACGGTGGTGGCCATTTGGGAAAAACAATGAAAAGTGTGATGATTCGACGACTCATCAGAACAAGGTGGTTAGTCATGTTGAGGATTCAAAGTTATCTGAACTGGACCAGACGGCTAGTCAATCAGAAGAGCCCAACTCTGAACTGGATCATAATGTTAGTCAATCTGAAGAGCCCAAGTTATCAGAATTGGATCATCCCGGAAAGACGGAGTTATTTTCCAGTGCTTCCTTTTGGAATGATATGGAATCTTTTATCTTTGCACCCAGAGCCTCACTACTTTTCTCCCAGTCAAGAAGCAGGGAGGATGTGGTGCAAAGGTTACAGAATGGAGGACCCTTGCTTCTTAGATCACTCCCCAAAAAGGATATCCTTCAATTGGTTGAAATGTTAATAGCAGAGAAAAAATGGTTGGAGGAAATGCCCTCCCAAAAATTTCCTTTGAAGTTAACTAAGGCTGTTCATAAAAATTCAATGGTGGACCAATCCCATGGTGCAAATGGTTTGAGATCTCTCTTTCTAAGTAGAACATCACAGTCGAACCTGCAAAAATCTTTAGAACCTGATGTGGAGAAACACAATCAGAATGTTTCTCACACTCCCATTTCTGCGGTGGTCACTGAAACAAAATATAGTGAGAGATCTAGAAATGATATATTAAATGACTGTCAGAAACTTGTGAGTGAGATACTAAGGGAACACCCAGAGGGATATAATGTTAGTTCTTTCCGAAGACTATTTGTAGATACGTATGGGTATCATCTTGACATAAAGAAGCTTGGTTATCAGAAGTTGGCAGCCTTGCTACAGATAATGCCTGGGGTTAAATTAGAGTCCACTTACATTTTTCCTTCTGTTCATGCTGTCTGTGATTCTGATTTGGAAACTTCTATCCTCGAAACTCAGGCAACAACTGATAATCATGCGGTCTCCAATGCAGATAGTGAATTATCTGAGTCAACCCAGGAAGATGATGACATGGAATCTCGATGGGAGGAGTTAGGTCCTGTTTCTATCACCAATTCCGACAAGAATTGTTTGGGTTTAAAGTCAAGTAAGAAAGCTATAGAATTGGATGTATCAAAATCAAAGCATCCTGATTATGAACTTGTCTCAGATGACGAGTCTGCAGCATCTGAAGGAGATGACTCTTGTTTGACTCAATCAGAAGAGCACAGAAAGTCAATTTGTAATGAACGTGACAGTTCCTTTTGGCAAGCAATGGATTTCTGGCACAGCTGCAAAGAAGGAGAGAATAGTGTCAAGAAGTCAGACAATTTTGACAGCTTGGGCGTTTCTCTGGCTGATATTTTAGATTCATCCACTGAGTCGACCAGCGGTACCATTTCTGGAATTCCTTCATCAAATTACAGAGATAATATTGTCAAGAAGTCAGATGATGTTGACAGCTTGGATGTTTCTCTGGCTGATATTTTTGATTCATCCCTTGAGTCGACCAGGGTTACCCCTTCCAAAACATCTTCATTAAATTACAGAGATAAACAAAAAACTCACAAGAACTATTCCTTCGTTGTTGATCCGGTCTTACCAAACAAGGGCAAGCTGATTGACGACTTAAAGAAAGTAGATGAGTCAAAGATGCAAAAATTGAATAGTTCCGGTTCAAGTAGGACTTGA 3285 0.4423 MPTASRLFVIPTTRPILAKTIVFMSSCSARRLEPCEPSPSPACAEEESRNVRVWAWWDFKNCPVPSDFDASKVTPTIMEAVRANGIKGPLNITAFGDVQQLPRAHQEALVYTGVRFIHVSNRERNSADILVDLMYWVSQNPPPAHIFMISGDIDFAGTLHRLRMSNYNILLATPKKTPDVLLHSAATIAWHWYSMLKGQNLTGKVLNHPPDGPFGSWYGSFKEAVTLADLPAVEVPVTVAAPQVTTLPNVEVYGPSLSSVPKSVARQVRHILSLHPKGLDISNLRAELVKCDVRLEKNLYGHKKFSRFLMSLPRVEVRDGGDGSFTAHLVPSKSMEPSENRYIESAISGAKNEEAGCAAAPELNGQGKSKVRNADGKLSIASDFESSLGEDLTSFQPGRSQGRPVEESELRKSSLACDWFVDLASAPQSETQLLHKDTKDSKTKMDSLKMGSKKLSDNDTVRSKVASMEKHTTKESNSAGNDQSTVENNVMANYESGNFEAKNKCENPVKEIDEVFRGLSLPVDGAQAVQTPGGSAETNNRSPTLFHWIRRWWPFGKNNEKCDDSTTHQNKVVSHVEDSKLSELDQTASQSEEPNSELDHNVSQSEEPKLSELDHPGKTELFSSASFWNDMESFIFAPRASLLFSQSRSREDVVQRLQNGGPLLLRSLPKKDILQLVEMLIAEKKWLEEMPSQKFPLKLTKAVHKNSMVDQSHGANGLRSLFLSRTSQSNLQKSLEPDVEKHNQNVSHTPISAVVTETKYSERSRNDILNDCQKLVSEILREHPEGYNVSSFRRLFVDTYGYHLDIKKLGYQKLAALLQIMPGVKLESTYIFPSVHAVCDSDLETSILETQATTDNHAVSNADSELSESTQEDDDMESRWEELGPVSITNSDKNCLGLKSSKKAIELDVSKSKHPDYELVSDDESAASEGDDSCLTQSEEHRKSICNERDSSFWQAMDFWHSCKEGENSVKKSDNFDSLGVSLADILDSSTESTSGTISGIPSSNYRDNIVKKSDDVDSLDVSLADIFDSSLESTRVTPSKTSSLNYRDKQKTHKNYSFVVDPVLPNKGKLIDDLKKVDESKMQKLNSSGSSRT 1094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04464 1094 ProSiteProfiles OST-type HTH domain profile. 768 842 IPR025605 -
Spst3g04464 1094 MobiDBLite consensus disorder prediction 432 486 - -
Spst3g04464 1094 Gene3D - 258 336 IPR041966 -
Spst3g04464 1094 MobiDBLite consensus disorder prediction 389 409 - -
Spst3g04464 1094 PANTHER LIMKAIN B LKAP 42 779 IPR024768 GO:0005777|GO:0010468
Spst3g04464 1094 CDD PIN_limkain_b1_N_like 52 174 - -
Spst3g04464 1094 MobiDBLite consensus disorder prediction 472 486 - -
Spst3g04464 1094 Pfam OST-HTH/LOTUS domain 261 323 IPR025605 -
Spst3g04464 1094 Pfam OST-HTH/LOTUS domain 769 827 IPR025605 -
Spst3g04464 1094 MobiDBLite consensus disorder prediction 854 879 - -
Spst3g04464 1094 CDD LOTUS 769 824 - -
Spst3g04464 1094 MobiDBLite consensus disorder prediction 599 616 - -
Spst3g04464 1094 Gene3D - 763 830 IPR041966 -
Spst3g04464 1094 MobiDBLite consensus disorder prediction 583 598 - -
Spst3g04464 1094 Pfam NYN domain 52 186 IPR021139 GO:0004540
Spst3g04464 1094 MobiDBLite consensus disorder prediction 576 616 - -
Spst3g04464 1094 MobiDBLite consensus disorder prediction 916 940 - -
Spst3g04464 1094 MobiDBLite consensus disorder prediction 433 471 - -
Spst3g04464 1094 ProSiteProfiles OST-type HTH domain profile. 260 331 IPR025605 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04464 Spst-Chr3 96178026 96181653 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04464 44 198 C2H2 Transcription Factor Family AT5G61190 38.854 7.13e-30 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04464 - - pvu:PHAVU_003G208800g 1577.76