Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04450 ATGGCGGCAGGGCGAAAAAGTGTTTCTCTGAGAAGAGACTTTTGCAAATACAGTTCCACCAAGGGGTCTGATCACTATAAGAATGGCTCTTTCGGCGTGGAAGTGGGTGGATCTCTCAGCCATCACTTTGCTCGTTCCGATGGGCTTCGTGGTGGAAAAGAAGAGAGAGAACAAGGTGAGATCTGTGTTGAAGATGGGGAATATGAGGGTGCATATGGTTTGCCACCGCCACAGAAGAAAAGGAAGTTTTCTCCAATCGTGTGGGACCTAGTAGAGAAGGAAGAAAGAATCTCGTCAAAGAGTAGGATCTCGAAGAATGATGCTTTCTCTCCTCCTCGTCCTTGTATTCCGAGCAGTCCTGGAGCCAATGGTGTTGATTCAGGGGACGTAATGGAGGAATCTTTGCTGGATTCCGGAAGCAATAGACAAATTGTGGAGGAAGAGAATCATGTCCATGAGTGGACTATCACAAAGTCAAGATGGGCTTGTGATGATGGTCCCTCACCGAGGGCAGCTGATGATAAATTCAACCATGGAAAAGTGAGTTCCAGTCCTGAAATTGGTGAATTCCATGGCAGTGGATCGTCAGAGAGCACGGTCACTAGATCATCAGGAAGCGCGGGAAGAGATCATTTTGTGGGTCTATCTATTGATGATGCCGATTCTGAAAAGGATTTTCATATGGGCTCCATGGTCGATGTTGACGAACATACTGATGTTGGTGATTCTCTATCGGATTCTGAAGAGAGTGGTGGATTGATGCATGTGCACAGAAATATAAACATGCTTCAAAGTTGCAGAAATGTGGGCGAGTTTGAAATGATTAAGAAAATAAATGAAGGAACTTATGGTGTTGTCTATAAAGCTAGGGATAAGAAAACTGGAGAATTAGTAGCATTGAAGAAGGTGAAGATGAACATAGAGAGGGATGGGTTTCCGATGTCATCCTTGAGGGAAATAAACATTCTCTTGTCTTTGAACCATCCCTCTATTGTGAATGTTAAGGAAGTACTTGTAGATGATTTTGACGGTACTTTTATGGTAATGGAATACATGGAGTATGACCTTAAGGGAATGATGGAGGTTAAGAAACAGCCTTTTAGCATTAGTGAAATTAAATCCTTCATAAAGCAACTTCTTGAAGGTGTTAAGTATCTCCATGATAACTGGGTTATCCACAGGGACTTGAAGTCATCAAATATTCTGCTGAACCATGATGGGGAACTTAAAATATGCGACTTTGGGTTGGCAAGGCAGTATGGAAGCCCACGGAAGCCGTATACTCCTGTTGTGGTTACACTATGGTACAGAGCACCTGAACTTTTGTTGGGAGCTAAAGAATACTCAACAGCAATTGACATGTGGTCAGTGGGTTGCATAATGGCTGAATTAATTGCCAAGGAGCCTCTGTTCAGGGGTAAAAGTGAACTTGAGCAACTTGATCAGATTTTTCGAACCTTGGGTACACCTGACGAGAAAATTTGGCCTGGATTATCCAAATTACCTGGAGCTAAAGCAAAATTTGTCAAGCAACCGTTTAATATGCTAAGGAAGAAGTTTCCAGCTGCGTCGTTTACTGGTTTGCCAGTTTTATCTGAGCTGGGATTTGACTTGTTGAAGAATCTTCTAACTTATGACCCCGAAGAGAGGATAACTGCAGAAGATGCTCTCCTTCATGATTGGTTCTATGAAGCCCCTCTTCCCAAATCTGATTGCAAGCCTATTTTTCCTTCTTGGAGGTGCTAG 1746 0.4307 MAAGRKSVSLRRDFCKYSSTKGSDHYKNGSFGVEVGGSLSHHFARSDGLRGGKEEREQGEICVEDGEYEGAYGLPPPQKKRKFSPIVWDLVEKEERISSKSRISKNDAFSPPRPCIPSSPGANGVDSGDVMEESLLDSGSNRQIVEEENHVHEWTITKSRWACDDGPSPRAADDKFNHGKVSSSPEIGEFHGSGSSESTVTRSSGSAGRDHFVGLSIDDADSEKDFHMGSMVDVDEHTDVGDSLSDSEESGGLMHVHRNINMLQSCRNVGEFEMIKKINEGTYGVVYKARDKKTGELVALKKVKMNIERDGFPMSSLREINILLSLNHPSIVNVKEVLVDDFDGTFMVMEYMEYDLKGMMEVKKQPFSISEIKSFIKQLLEGVKYLHDNWVIHRDLKSSNILLNHDGELKICDFGLARQYGSPRKPYTPVVVTLWYRAPELLLGAKEYSTAIDMWSVGCIMAELIAKEPLFRGKSELEQLDQIFRTLGTPDEKIWPGLSKLPGAKAKFVKQPFNMLRKKFPAASFTGLPVLSELGFDLLKNLLTYDPEERITAEDALLHDWFYEAPLPKSDCKPIFPSWRC 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04450 581 CDD STKc_CDC2L1 266 562 IPR045267 GO:0004674|GO:0005524|GO:0006468
Spst3g04450 581 Gene3D Transferase(Phosphotransferase) domain 1 354 572 - -
Spst3g04450 581 MobiDBLite consensus disorder prediction 188 206 - -
Spst3g04450 581 ProSiteProfiles Protein kinase domain profile. 272 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g04450 581 MobiDBLite consensus disorder prediction 99 127 - -
Spst3g04450 581 ProSitePatterns Serine/Threonine protein kinases active-site signature. 391 403 IPR008271 GO:0004672|GO:0006468
Spst3g04450 581 Gene3D Phosphorylase Kinase; domain 1 255 353 - -
Spst3g04450 581 FunFam Cyclin-dependent kinase G-2 354 581 - -
Spst3g04450 581 SUPERFAMILY Protein kinase-like (PK-like) 265 567 IPR011009 -
Spst3g04450 581 Pfam Protein kinase domain 272 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g04450 581 SMART serkin_6 272 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g04450 581 MobiDBLite consensus disorder prediction 163 213 - -
Spst3g04450 581 FunFam cyclin-dependent kinase G-2 isoform X1 257 353 - -
Spst3g04450 581 PANTHER CELL DIVISION PROTEIN KINASE 271 568 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04450 Spst-Chr3 96024676 96026823 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04450 267 574 Core Cell Cycle Gene Families AT5G10270 44.444 3.24e-87 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Spst3g04450 Pkinase 1.6e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04450 K08818 - gmx:100788840 937.947