Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04447 ATGGCCTCTTGCACTTCTCTTTCTCTTTGTCCTCACACCTTCTGTTGCCGCCACCGCCCTCACCTTACGCGCAGCTCCCTTTCTTGCTCTCTTTCCTCTTCTTCCCTCCCCGATACTGATGGACCTAAAGTACTGCGTAAAAGATCGAGAAGGATAGAAGGTCCCAGAAAAAGCATGGAAGATTCTGTTCAACGCAAGATGGAGGAATTTTATGAAGGACGGGATGGGCCACCCCTCAGAGTTCTTCCCATTGGTGGGTTGGGTGAAATTGGGATGAATTGCATGCTTGTTGGCAACTATGATCGCTATATCCTCATTGATGCTGGTGTTATGTTTCCAGACTATGATGAGCTTGGGGTCCAGAAGATCATACCTGATACAACGTTTATAAGAAAATGGAGACACAAAATTGAAGCAGTTATTATAACACATGGTCATGAAGATCATATTGGTGCATTGCCTTGGGTCATACCAGCATTAGATTCTCATACACCAATTTTTGCTTCATCCTTTACAATGGAGCTTATAAGGAAACGTTTGAAGGATCATGGTATTTTTGTTCCATCCCGGCTGAAAGTTTTTAGAACGAGGAAGAAGTTTATGGCTGGGCCATTTGAGATAGAGCCTATCACAGTGACTCACTCTATTCCTGATTGCAGTGGCCTAGTGCTCCGATGTTCTGATGGTACCATTCTTCACACTGGGGATTGGAAGATTGATGAAACACCATTAGATGGTAAAGTTTTTGATCGTGAAGCTCTAGAGGAACTCTCTAAAGAAGGAGTCACGTTGATGATGAGTGATTCAACAAATGTACTCTCACCTGGAAGGACAATTAGTGAATCTGTTGTTGCAGATGCATTATTGAGGAATATTTCAGCTGCTAAAGGACGTGTTATAACAACCCAGTTTGCATCAAATATACATCGTCTTGGAAGTGTGAAAGCTGCTGCTGATTTAACTGGAAGAAAGTTGGTATTTGTTGGCATGTCGCTAAGAACATATTTAGATGCAGCTTGGAAGGATGGGAAGGCTCCAATTGATCCATCAACTCTGGTGAAAGCGGAGGATATTGATGCTTATGCACCAAAGGATTTGCTAATTGTTACAACTGGCTCTCAAGCAGAACCACGTGCTGCCTTAAATCTTGCATCTTATGGAAGTAGTCATGCTTTCAAGCTTACAAAAGAGGATATTGTGCTGTATTCAGCAAAGGTTATCCCTGGTAATGAGTCTCGTGTTATGGAAATGCTAAACCGCGTATCAGAGATTGGATCAACTATAGTTATGGGGAAGAATGAATGTCTACACACATCTGGTCATGGATATCGTGGAGAATTGGAGGAAGTACTTAGAATTGTGAAGCCACAACATTTTCTACCCATACACGGAGAACTTTTGTTCCTGAAGGAGCATGAATTACTTGGAAAATCAACTGGCATTCGGCACACAACTGTTATTAAGAATGGAGAGATGCTCGGTGTTTCACATTTGAGAAATAGAAGAGTCCTTTCCAATGGTTTCATTTCACTTGGAAAAGAGAATTTCCAGTTGATGTATAGTGATGGCGAAAAAGCATTTGGTACATCAAGTGAACTCTTTATTGATGAAAGATTGAGAATTGCATTAGATGGCATCATAGTTGTTAGCATGGAAATATTTCGCCCACAAAATTTAGACAGTCCAGTTGAGAACACCTTAAAAGGAAAAATAAGAATTACCACAAGATGCCTGTGGCTTGACAAGGGAAAGCTGTTAGATGCACTCCATAAAGCTGCTCATGCTGCTCTTTCAAGCTGCCCTGTGAGCTGTCCACTGGCTCATATGGAAAGAATTGTGTCTGAGGTGTTGAGAAAAATGGTGAGGAAGTACAGTGGCAAACGGCCTGAAGTTATTGCTATTGCCGTAGAAAATCCTGCAGCTGTTCTTGCTAATGAGATAAACACAAAGCTGTCTGGAAAATTCCATGTTGATGGGATATCGACATTGAGAAAAGTGGTGGATGGACATGGGAAAGAAAATCAGAGAACCAAAACCCAAATAAGAGATCGAATTGATTTAGGTGGTATACTACCTACTGAAGACATTGCTACTTCAAGTGGAGTTGAGGACGACTTGTCTGATGCAGAGGTTTCAGATGATCTTTTTAAACCACTTGTTGGATCCTCTCCATTTGAGAAGACTATTAAAGCTAACAATGGTTATGTTCCACTAAAAGAGAAGTCATCCCCATTGAAGGATGATGATTCTGAAGATTCTGAAGACACTGAAGAATGCAATTCTGTAAATACATCAAATTCTGAATCTAAATCTTCAAAATCAGCAAAGAGAAATAAATGGAAACATGATGAAGTTAAGAAGCTCATTGGTATGCGTGGGGAATTGAATGACAGATTTCAAGTTGTGAGGGGAAGGATGGCCCTCTGGGAAGAAATATCTCAGAATTTGTTGTCTAATGGGATCAGCAGAAGTCCTGGGCAGTGTAAATCTCTGTGGACATCTTTGTTACAGAAATACGAGGAGGTAAAGAATGAGAAGAATAGCAAGAAAAAATGGCCGTATCTTGAGGACATGGAAAGGATTCTGTCCACTAGCGAGGCACTGACAACAAAATGA 2616 0.4106 MASCTSLSLCPHTFCCRHRPHLTRSSLSCSLSSSSLPDTDGPKVLRKRSRRIEGPRKSMEDSVQRKMEEFYEGRDGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAGVMFPDYDELGVQKIIPDTTFIRKWRHKIEAVIITHGHEDHIGALPWVIPALDSHTPIFASSFTMELIRKRLKDHGIFVPSRLKVFRTRKKFMAGPFEIEPITVTHSIPDCSGLVLRCSDGTILHTGDWKIDETPLDGKVFDREALEELSKEGVTLMMSDSTNVLSPGRTISESVVADALLRNISAAKGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPIDPSTLVKAEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHAFKLTKEDIVLYSAKVIPGNESRVMEMLNRVSEIGSTIVMGKNECLHTSGHGYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTTVIKNGEMLGVSHLRNRRVLSNGFISLGKENFQLMYSDGEKAFGTSSELFIDERLRIALDGIIVVSMEIFRPQNLDSPVENTLKGKIRITTRCLWLDKGKLLDALHKAAHAALSSCPVSCPLAHMERIVSEVLRKMVRKYSGKRPEVIAIAVENPAAVLANEINTKLSGKFHVDGISTLRKVVDGHGKENQRTKTQIRDRIDLGGILPTEDIATSSGVEDDLSDAEVSDDLFKPLVGSSPFEKTIKANNGYVPLKEKSSPLKDDDSEDSEDTEECNSVNTSNSESKSSKSAKRNKWKHDEVKKLIGMRGELNDRFQVVRGRMALWEEISQNLLSNGISRSPGQCKSLWTSLLQKYEEVKNEKNSKKKWPYLEDMERILSTSEALTTK 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04447 871 SMART Lactamase_B_5a 91 288 IPR001279 -
Spst3g04447 871 PANTHER RIBONUCLEASE J 1 870 - -
Spst3g04447 871 MobiDBLite consensus disorder prediction 41 59 - -
Spst3g04447 871 Pfam Beta-lactamase superfamily domain 102 238 IPR001279 -
Spst3g04447 871 CDD RNaseJ_MBL-fold 82 493 - -
Spst3g04447 871 Gene3D - 280 430 IPR042173 -
Spst3g04447 871 MobiDBLite consensus disorder prediction 736 778 - -
Spst3g04447 871 SUPERFAMILY Metallo-hydrolase/oxidoreductase 79 493 IPR036866 -
Spst3g04447 871 Gene3D - 780 841 - -
Spst3g04447 871 MobiDBLite consensus disorder prediction 32 59 - -
Spst3g04447 871 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 435 477 IPR011108 -
Spst3g04447 871 Pfam Myb/SANT-like DNA-binding domain 777 861 IPR044822 -
Spst3g04447 871 CDD GT1 780 843 - -
Spst3g04447 871 ProSiteProfiles Myb-like domain profile. 772 836 IPR001005 -
Spst3g04447 871 Gene3D - 83 495 IPR036866 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04447 Spst-Chr3 95998818 96007106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04447 779 864 Trihelix Transcription Factor Family AT2G38250 34.091 2.86e-11 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Spst3g04447 Lactamase_B_2 4.5e-10 CL0381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04447 - - gmx:100814619 1521.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04447 3 95998818 96007106 Spst9g02102 9 43110925 43113374 PCT