Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04440 ATGGATACTGTCATAGAGGTTGTCTCCGGTGCGCATTTCTCCGGTTGGCATCCTTCAACATCATCTTCTACTTCTCCAAGATCTTCTCGTCACCCCTTCATCATCGGTGTCTCTGGAGGCACTGCATCGGGGAAAACGACAGTGTGCGACATTATCGTTCAGCAACTGCAAGATCACAGAGTTGTGCTCCTCTGTCAGGATTCATTCTACCGCGGTTTGACGAATGATGAGTTGAAACGCGTTCATGAGTATAACTTTGATCATCCTAATGCGTTTGACACAGAGCAACTTGTAGAAACCCTCGGTCAGCTCAAATCTGGACAGTCGGTTCAAGTTCCAATATATGATTTTAAGCTTCATCAGAGATCAACCGACAAATCCCGACAGGTCAATGGATCTGATGTAATCATTATGGAGGGTATATTGGTTTTTCATGAACAACGTGTCCGTAACATGATGAATATGAAGATATTTGTTGATGCAGATCCAGATGTAAGGCTTGCCCGCAGAGTAAAACGTGATACAGTTGAGAGGGGTAGAGATGTACAATCTGTACTGGAACAGTATGCAAAATTTGTTAAGCCAGCTTATGAAGATTTTATACTTCCTTCCAAAAAATATGCCGACATAATCATACCTCGTGGGGGAGAGAATCGTGTAGCAATTGACTTGATTGTTCAACATATCCGCACTAAGCTTGGCCAACATAACCTCTGCAAGATATATCCGAATGTGAATGTTATTCAGTCTACCTTCCAGACTAGAGGCATGCACACTCTTATTCGTGATAGGGACATATCAAAGCATGATTTTATTTTTTATTCAGACCGGCTAATTCGTTTGGTAGTGGAACATGGTCTTGGTTACTTGCCGTTTACAGAGAAACAAGTTATCACACCTACAGGATCAATTTATACGGGAGTTGATTTTTGTAAGAAATTGTGCGGAGTATCCATTATTCGAAGTGGCGAAAGTATGGAAAATGCTTTGCGTGCTTGCTGTAAAGGAATAAAGATCGGAAAAATTCTCATTCACCGCGATGGTGATGAAACCCAGCTTATTTATGAGAAGCTTCCTAAAGATATTTCGGAGAGACATGTTCTTCTCATGGACCCAGTACTTGGTACAGGTAACGCTGCCAGCGAAGCAATCGAGCTTCTTATAAAGAAGGGAGTTCCAGAGTCCCAGATAATATTCCTTAACCTCATTTCTGCTCCTGAGGGCATTCAATGTGTATGTAGACGTTTTCCGCATCTGAAAATTGTCACATCGGAGATTGAAGAAGGATTGAATGACCACTTCCGGGTCATACCAGGGTTGGGAGAATTTGGTGACCGTTACTTTGGTACGGACGATTCTTAG 1362 0.4229 MDTVIEVVSGAHFSGWHPSTSSSTSPRSSRHPFIIGVSGGTASGKTTVCDIIVQQLQDHRVVLLCQDSFYRGLTNDELKRVHEYNFDHPNAFDTEQLVETLGQLKSGQSVQVPIYDFKLHQRSTDKSRQVNGSDVIIMEGILVFHEQRVRNMMNMKIFVDADPDVRLARRVKRDTVERGRDVQSVLEQYAKFVKPAYEDFILPSKKYADIIIPRGGENRVAIDLIVQHIRTKLGQHNLCKIYPNVNVIQSTFQTRGMHTLIRDRDISKHDFIFYSDRLIRLVVEHGLGYLPFTEKQVITPTGSIYTGVDFCKKLCGVSIIRSGESMENALRACCKGIKIGKILIHRDGDETQLIYEKLPKDISERHVLLMDPVLGTGNAASEAIELLIKKGVPESQIIFLNLISAPEGIQCVCRRFPHLKIVTSEIEEGLNDHFRVIPGLGEFGDRYFGTDDS 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04440 453 SUPERFAMILY PRTase-like 235 451 IPR029057 -
Spst3g04440 453 PANTHER URIDINE KINASE 22 361 - -
Spst3g04440 453 FunFam Uridine kinase 236 450 - -
Spst3g04440 453 Pfam Phosphoribulokinase / Uridine kinase family 34 220 IPR006083 GO:0005524|GO:0016301
Spst3g04440 453 MobiDBLite consensus disorder prediction 16 36 - -
Spst3g04440 453 Gene3D - 236 450 IPR029057 -
Spst3g04440 453 MobiDBLite consensus disorder prediction 16 31 - -
Spst3g04440 453 FunFam Uridine kinase 29 235 - -
Spst3g04440 453 CDD UMPK 34 232 IPR000764 -
Spst3g04440 453 NCBIfam uridine kinase 32 232 IPR000764 -
Spst3g04440 453 CDD PRTases_typeI 309 423 IPR000836 -
Spst3g04440 453 Gene3D - 28 235 IPR027417 -
Spst3g04440 453 PRINTS Uridine kinase signature 200 213 - -
Spst3g04440 453 PRINTS Uridine kinase signature 107 122 - -
Spst3g04440 453 PRINTS Uridine kinase signature 62 73 - -
Spst3g04440 453 PRINTS Uridine kinase signature 178 189 - -
Spst3g04440 453 PRINTS Uridine kinase signature 164 174 - -
Spst3g04440 453 PRINTS Uridine kinase signature 32 49 - -
Spst3g04440 453 ProSiteProfiles UvrC family, homology region profile. 138 221 IPR001162 GO:0009381
Spst3g04440 453 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 225 IPR027417 -
Spst3g04440 453 Pfam Uracil phosphoribosyltransferase 250 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04440 Spst-Chr3 95944890 95950084 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04440 1 452 PRT Gene Family AT5G40870 75.840 0.0 738
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04440 K00876 - gmx:100816209 811.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04440 3 95944890 95950084 Spst3g04440 3 95944890 95950084 ECH