Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04438 ATGGCCACTGAGCAAGGCAGAGAGATGAAAGGAAAGAATTCACTAGGGACAGAACAGATCAAGGCTGCACTTACTGGTTGGCTAGAAATAGTAATTGACTCACTGGAAAGTGGCTACAGGCATAAGGGATGCCTTGAAACTAAGGAACAGAACAAGGTTGTAGAAGTCAGCAGCAGAAAGACATTAGAAGCGCTCAAGCTCCACAGCCTAATACAATATACCCTTGAAATCTCATCACATCCTGGTGGTTTGCTTTTTACAAAATTTGGTAGCAATCAGACTGCCCTTCTTGACTTGGCTTTCCCTGATAGTTTTGGAAGGTTGCATGACAGAGGGAAGGAAGTTCCAAAACCAAATAGAACTTTGACTAAACTGTTCCCAAATAAAATTACAATTCACATGCCTCAGGATGAGGCTCTTTTAGCATCTTGGAAGCAGCAACTGGATCGGGATGTTGAGACTCTCAAAATCAAAGGAAATTTACATCATTTGCGTGCAGTTTTGGGACGATGTGGAATGGAATGTGAAGGACTCGAGACCTTATGCATTAGGGATCAGACACTTTCAAATGAAAATGCAGAGAAGATAATCGGTTGGGCTTTAAGTCACCATCTCATGCAGAATTCAGAAGCTAAGCCTGATTCAAAGCTTGTATTGTCGAGTGAGAGCATTCAGTATGGAATTGGGATCTTGCAGTCTATCCAGAATGAGTCCAAGAGCCTGAAGAAATCTCTTAAGGATGTTGTAACAGAAAATGAATTTGAAAAGAGGCTTTTGGCTGACGTTATTCCACCTAGTGACATTGATGTTACCTTTGATGATATTGGAGCTCTTGAAAAGGTCAAGGATACATTGAAGGAGTTGGTGATGCTTCCTTTACAGAGGCCCGAGCTTTTCTGCAAGGGACAATTAACCAAGCCATGCAAAGGTATCCTATTATTTGGCCCCCCTGGAACAGGTAAAACAATGCTCGCAAAGGCAATTGCTACTGAAGCTGGTGCAAACTTCATTAACATTTCTATGTCAAGTATTACATCTAAGTGGTTTGGAGAGGGTGAGAAATACGTGAAAGCTGTTTTCTCTCTGGCGAGTAAAATTTCTCCAAGTGTTATATTTGTTGACGAAGTTGACAGCATGTTGGGTCGGAGGGAAAATCCAGGGGAGCATGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTGAATTGGGATGGCCTACGAACGAAGGAAACAGAGCGAGTTCTTGTGCTGGCAGCCACTAACAGGCCTTTTGACCTAGATGAGGCTGTTATAAGGAGGATGCCAAGAAGATTGATGGTAAATTTGCCAGACGCTCCTAACAGAGCAAAAATATTGAAAGTTATACTGGCCAAAGAGGAATTGTCTCTTGATGTTGATTTGGATGCAGTTGCTACTATGACTGATGGATATTCCGGAAGTGATCTCAAGAATTTATGTGTTACTGCAGCACATCGGCCTATTAAGGAGATATTAGAGAGGGAAAAAAAGGAACGTGTTGCTGCTCTAGCAGTAGGTCAACCAGCTCCAGCATTATGTAGCAGTGGGGACATCAGATCATTAAACATGGACGACTTCAAATATGCTCATCAGCAGGTTTGTGCAAGTGTTTCTTCTGAATCAGTAAATATGACTGAGCTTTTACAGTGGAATGAACTATATGGAGAAGGGGGTTCAAGAGTTAAGAAAGCACTCAGCTATTTCATGTGA 1728 0.4201 MATEQGREMKGKNSLGTEQIKAALTGWLEIVIDSLESGYRHKGCLETKEQNKVVEVSSRKTLEALKLHSLIQYTLEISSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEVPKPNRTLTKLFPNKITIHMPQDEALLASWKQQLDRDVETLKIKGNLHHLRAVLGRCGMECEGLETLCIRDQTLSNENAEKIIGWALSHHLMQNSEAKPDSKLVLSSESIQYGIGILQSIQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIDVTFDDIGALEKVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAIATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKISPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKETERVLVLAATNRPFDLDEAVIRRMPRRLMVNLPDAPNRAKILKVILAKEELSLDVDLDAVATMTDGYSGSDLKNLCVTAAHRPIKEILEREKKERVAALAVGQPAPALCSSGDIRSLNMDDFKYAHQQVCASVSSESVNMTELLQWNELYGEGGSRVKKALSYFM 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04438 575 Gene3D - 443 537 - -
Spst3g04438 575 Pfam AAA+ lid domain 464 499 IPR041569 -
Spst3g04438 575 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 269 551 IPR027417 -
Spst3g04438 575 ProSitePatterns AAA-protein family signature. 414 433 IPR003960 GO:0005524|GO:0016887
Spst3g04438 575 Gene3D - 269 550 IPR027417 -
Spst3g04438 575 SMART AAA_5 307 444 IPR003593 GO:0016887
Spst3g04438 575 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 51 574 - -
Spst3g04438 575 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 269 445 - -
Spst3g04438 575 Pfam ATPase family associated with various cellular activities (AAA) 311 440 IPR003959 GO:0005524|GO:0016887
Spst3g04438 575 Coils Coil 231 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04438 Spst-Chr3 95930764 95935499 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04438 270 502 Calmodulin-binding Proteins AT3G56690 40.506 1.13e-41 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04438 - - gmx:100790427 941.799