Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst3g04418 | ATGTCATCGTCTTCGTCTATCATGGCCTATGACATGCCATGGGTAGAGAAGTATCGTCCCAACAAAGTCGTTGACATAGTCGGCAACGAGGATGCGGTCTCCAGACTCCAAGTCATCGCTCGTGATGGCAACATGCCCAATCTCATTTTATCAGGTCCTCCTGGGACAGGAAAAACAACTAGTATACTTGCCCTGGCCCACGAGCTTCTTGGACCAAATTGCAAAGAAGGTGTTCTTGAACTTAATGCATCTGATGATAGAGGAATTGATGTTGTGAGGAACAAGATCAAAATGTTTGCTCAGAAGAAAGTGACGCTTCCTCTAGGGAGGCACAAGATAGTAATTCTGGATGAAGCTGATAGCATGACCACAGGGGCACAACAAGCACTGAGAAGAACTATGGAGATATATTCTAACTCTACTCGGTTTGCCCTTGCTTGCAATACCTCAGCTAAAATTATTGAGCCCATTCAGAGTAGATGTGCCATTGTGCGGTATTCACGGTTATCCGATCAAGAGATACTTGGTCGACTTATGATTGTGGTTCAAGCTGAGAAGGTTCCCTACGTTCCTGAAGGTCTTGAAGCCATCATTTTCACTGCCGATGGTGATATGAGACAGGCATTGAATAATTTGCAAGCAACGTACAGTGGGTTCCAATTTGTTAACCAAGAAAATGTTTTCAAGGTTTGTGACCAGCCACATCCACTTCATGTGAAGAATATGGTGCGTAATGTAATTGAAGGGAATTTTGATGAGGCTTGTTCGGGGCTCAAACAACTGTATGATTTAGGATATTCTCCCACAGATATCATCACGACTCTTTTTCGTATAATAAAAAATTATGATATGGCTGAGTACCTTAAATTGGAATTCATGAAGGAAACTGGGTTTGCTCATATGAGAATTTGTGATGGAGTTGGATCTTATCTTCAGTTGTGTGGTTTATTGGCTAAGCTTTTTCTAGTTCGAGAGACGGCTAAAGCTGTATGA | 993 | 0.423 | MSSSSSIMAYDMPWVEKYRPNKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNCKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPLGRHKIVILDEADSMTTGAQQALRRTMEIYSNSTRFALACNTSAKIIEPIQSRCAIVRYSRLSDQEILGRLMIVVQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFQFVNQENVFKVCDQPHPLHVKNMVRNVIEGNFDEACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLFLVRETAKAV | 330 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst3g04418 | 330 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 10 | 232 | IPR027417 | - | |
Spst3g04418 | 330 | FunFam | replication factor C subunit 2 | 234 | 326 | - | - | |
Spst3g04418 | 330 | Pfam | ATPase family associated with various cellular activities (AAA) | 48 | 166 | IPR003959 | GO:0005524|GO:0016887 | |
Spst3g04418 | 330 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 233 | 324 | IPR008921 | GO:0003677|GO:0006260 | |
Spst3g04418 | 330 | Gene3D | - | 6 | 169 | IPR027417 | - | |
Spst3g04418 | 330 | Gene3D | - | 234 | 326 | - | - | |
Spst3g04418 | 330 | PANTHER | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT | 12 | 314 | - | - | |
Spst3g04418 | 330 | CDD | AAA | 27 | 164 | - | - | |
Spst3g04418 | 330 | FunFam | Replication factor C subunit 4 | 170 | 233 | - | - | |
Spst3g04418 | 330 | Pfam | Replication factor C C-terminal domain | 234 | 319 | IPR013748 | - | |
Spst3g04418 | 330 | SMART | AAA_5 | 44 | 170 | IPR003593 | GO:0016887 | |
Spst3g04418 | 330 | CDD | HLD_clamp_RFC | 169 | 231 | - | - | |
Spst3g04418 | 330 | Gene3D | - | 170 | 233 | - | - | |
Spst3g04418 | 330 | FunFam | Replication factor C subunit 4 | 6 | 169 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst3g04418 | Spst-Chr3 | 95726386 | 95729139 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst3g04418 | 9 | 329 | Core DNA Replication Machinery Family | AT1G63160 | 91.589 | 0.0 | 617 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst3g04418 | K10755 | - | gmx:100781364 | 623.239 |