Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04417 ATGGGTAAGGCGTCAAAGTGGTTTCGCGGGCTTCTCGGTCTCAAAAAAACAGACCATAATACCTCACCGGCGAAGCCACCCAAAGAGAAACGCCGATGGAGCTTCGTTAAATCATACACAGAGAAGGACAACAACACTGCTGCCACGTGTCTACAACAAGGAAACAACAACAGTAACCATGCCATGGCAGTGGCAGCAGCCACTGCTGCGGTGGCGGAAGCGGCTGTGGCTGCCGCTGAAGCGGCCGCCGTCGTTGTCAGACTTACAAGCAACAGCGGTAGATGCGCCGACGCGGGACCCACAAGGATTCGCCAACATTGGGCCGCCGTTAAGATCCAAGCCGCTTTTCGAGGCTGTTTGGCAAGGAGAGCACTGAGAGCATTAAAGGGGTTGGTAAAGCTCCAAGCATTGGTGAGAGGTCACATTGAGAGGAAGCGTACGGCACAGTGGCTGAAAAGAGTGCATACCCTCTTGCATGCACAGGCACAAGTCTCTGCAGGGTTGGCTCAGCATGCCTCACCTTCAAGCGCAAAGTTATCTAGCCACCTCCATGGTCCAGAAACACCCGAAAAATTTGAAAGTCCCATCAGATCTAAGAGCATGAAACATGAGCAATCACCTATACTCAAGAGAAATGGCTTCAAATCCTGTGTCCAGATCAATGGCTATCAAGAGATATGTGGAAGTAGATCAGAGAATCAAGTAACTGAACAATCATGGAACTCGGCAAGATCATTGATAAGAACATATAGTTCCAATGATGAAAGAAATGACAGGGTTCTTGAAGTTGATTCTGGAAAACCACACTTCCCAAAGCGTAGAAACCTCTCTTACTCCACAGGTTCTGATCATTATAGTAAGAGTTTGAACAGCACAAAGGAGTCAACTTCTCTTCAATCGGGTCAAAGTCCATGTGGTGAAGTTCAGTCTTACAGTTACAGCTCACAAAAAGCCAACGAGGTTGAAGAGAGCCCATTCTGCACTGCTGACAATAGTCCACAATTCTTATCAGCCACTTCTAAAGACGATGGCTTCAAAAGAAGCCCTTTTACTCCCACAAGGAGTGATGGCTCTAGAAGCTACATTCGTGGTTATCCTGACTACCCAAGTTATATGGCATGCACCGAGTCTTCAAAAGCAAAGGTCAGATCCCTGAGTGCCCCAAAACAAAGGCCAAATAGTGAGAGGCCTGGTTCATCTAATAGATACTCACTTAATGGATTTGATATGTCAAGATTGGCCACACAAAGGGCAATGCATGCAAGCTTCACCAACAAGGCATATCCAGGTTCTGGTCGTTTGGACAAGCTTGGTATGCCTGTGGGGTACAGATACTGA 1338 0.4753 MGKASKWFRGLLGLKKTDHNTSPAKPPKEKRRWSFVKSYTEKDNNTAATCLQQGNNNSNHAMAVAAATAAVAEAAVAAAEAAAVVVRLTSNSGRCADAGPTRIRQHWAAVKIQAAFRGCLARRALRALKGLVKLQALVRGHIERKRTAQWLKRVHTLLHAQAQVSAGLAQHASPSSAKLSSHLHGPETPEKFESPIRSKSMKHEQSPILKRNGFKSCVQINGYQEICGSRSENQVTEQSWNSARSLIRTYSSNDERNDRVLEVDSGKPHFPKRRNLSYSTGSDHYSKSLNSTKESTSLQSGQSPCGEVQSYSYSSQKANEVEESPFCTADNSPQFLSATSKDDGFKRSPFTPTRSDGSRSYIRGYPDYPSYMACTESSKAKVRSLSAPKQRPNSERPGSSNRYSLNGFDMSRLATQRAMHASFTNKAYPGSGRLDKLGMPVGYRY 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04417 445 MobiDBLite consensus disorder prediction 258 311 - -
Spst3g04417 445 SMART iq_5 127 148 IPR000048 GO:0005515
Spst3g04417 445 SMART iq_5 104 126 IPR000048 GO:0005515
Spst3g04417 445 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 154 IPR027417 -
Spst3g04417 445 ProSiteProfiles IQ motif profile. 105 133 IPR000048 GO:0005515
Spst3g04417 445 Gene3D - 103 156 - -
Spst3g04417 445 MobiDBLite consensus disorder prediction 338 358 - -
Spst3g04417 445 Pfam Protein of unknown function (DUF4005) 332 407 IPR025064 -
Spst3g04417 445 Pfam IQ calmodulin-binding motif 106 126 IPR000048 GO:0005515
Spst3g04417 445 Pfam IQ calmodulin-binding motif 132 146 IPR000048 GO:0005515
Spst3g04417 445 MobiDBLite consensus disorder prediction 338 362 - -
Spst3g04417 445 PANTHER IQ-DOMAIN 5-RELATED 1 406 - -
Spst3g04417 445 ProSiteProfiles IQ motif profile. 129 156 IPR000048 GO:0005515
Spst3g04417 445 MobiDBLite consensus disorder prediction 380 405 - -
Spst3g04417 445 MobiDBLite consensus disorder prediction 184 206 - -
Spst3g04417 445 MobiDBLite consensus disorder prediction 169 206 - -
Spst3g04417 445 MobiDBLite consensus disorder prediction 275 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04417 Spst-Chr3 95708614 95712036 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04417 1 445 IQD Protein Family AT4G23060 41.065 6.33e-68 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04417 - - gmx:100793587 733.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04417 3 95708614 95712036 Spst2g00332 2 2572839 2573885 PCT