Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04404 ATGGCTTCCTCCTCATCTTCATCAAAGAGACATCCACTGTACCATGGAATCCGATGCCGCGGAGGAAAATGGGTTACTGAAATCCGTGAGCCACGTAAGACCAACCGCATATGGCTGGGCACGTTCCCCACGCCGGAGATGGCCGCCGCTGCTTACGACGTGGCGGCGCTGGCCCTGAAAGGCGGCGAAGCGGTTCTCAACTTCCCGGACTCAATTGGCAAGTATCCGGTTCCCGCGTCCAAATCCCCTGCGGACATCCGCACCGCAGCCATCGCTGCAGCTGAACTCATGAAGCCCGAAGCCAGCCACAGCAACGTTAATACAGTAGCTCAGTCTGATAACACCGAGGGTGGTGGTTACGATGATAATGTCGTTGCTCCTTCGTATGAAACTGAATTTGTAGACGAGGAAGCCATATTCTCCATGCCGAGTTTGTTGGTCGACATGGCTGAGGGAATGCTACTAACCCCTCCCAGAATGAGCTCACCCTCTGATAACTGGCCCGAAAATTATTCTGGAGAAAATTTGTGGAACTTTTGA 540 0.5333 MASSSSSSKRHPLYHGIRCRGGKWVTEIREPRKTNRIWLGTFPTPEMAAAAYDVAALALKGGEAVLNFPDSIGKYPVPASKSPADIRTAAIAAAELMKPEASHSNVNTVAQSDNTEGGGYDDNVVAPSYETEFVDEEAIFSMPSLLVDMAEGMLLTPPRMSSPSDNWPENYSGENLWNF 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04404 179 CDD AP2 12 71 IPR001471 GO:0003700|GO:0006355
Spst3g04404 179 Pfam AP2 domain 14 61 IPR001471 GO:0003700|GO:0006355
Spst3g04404 179 SMART rav1_2 13 77 IPR001471 GO:0003700|GO:0006355
Spst3g04404 179 Gene3D AP2/ERF domain 13 70 IPR036955 GO:0003700|GO:0006355
Spst3g04404 179 SUPERFAMILY DNA-binding domain 13 71 IPR016177 GO:0003677
Spst3g04404 179 ProSiteProfiles AP2/ERF domain profile. 13 69 IPR001471 GO:0003700|GO:0006355
Spst3g04404 179 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 8 166 IPR045277 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04404 Spst-Chr3 95623872 95624411 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04404 3 179 AP2-EREBP Transcription Factor Family AT5G52020 52.486 1.34e-48 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst3g04404 AP2 8.5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04404 - - vra:106768065 313.923
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04404 3 95623872 95624411 Spst3g04404 3 95623872 95624411 ECH
Spst3g04404 3 95623872 95624411 Spst2g00343 2 2666226 2666738 PCT