Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04402 ATGAACATTCTCGGACAATCATCTCAGCAATCCAACAACGTCTGCTACTCTTGCTCCTCCCCGGAAACAAGCTCCTCAAACGCTCCCAACGCCGTTCACTCCGATGAGGAACTGCATGCATTAGCGTCGGCGCGCCCCAAGAAACGTGCGGGGCGTCGAATCTTTAAGGAGACACGCCACCCCGTCTACCGAGGAGTGCGACGGAGGAACAACAACAAGTGGGTCTGCGAGGTGCGGGTCCCCAATGACAAGTCCAGAAGGATTTGGCTCGGAACGTACCCAACCCCTGAGATGGCCGCACGTGCGCACGACGTTGCCGCGCTCGCGCTCCGAGGCAAGTCCGCTTGTATCAACTTCGCCGACTCGGCTTGGCGGCTTCCCTTGCCGGCGTCGACCAATGCGAAAGAGATACGGCGAGTGGCGGCTGCGGCTGCTATGGCGATTGCGACGGAAGACAGTTGCTTCAAGCAATCAGAGAACGAGATTAATGTGAATGCCGTGGCTGATTGCGAGGTTAGCAGCAGTGACGTCAGCGTTGATGAAGATGCCAAAGCCTTGCGGGGGTTTTGTAATTTGGATGAAATAACAATGCCGGATGCATCAGGTTTTGAAGACATGCATGAGTGGCTTCAGAGTATGGTGGATGAACCTCTGCGATCGCCTACTTTTGTAACATATGTTAGGGACTGGAACTTTGTGGAGGATGATGCTGAGGTTTCTTTGTGGAGCTTCTCCATCTGA 741 0.5452 MNILGQSSQQSNNVCYSCSSPETSSSNAPNAVHSDEELHALASARPKKRAGRRIFKETRHPVYRGVRRRNNNKWVCEVRVPNDKSRRIWLGTYPTPEMAARAHDVAALALRGKSACINFADSAWRLPLPASTNAKEIRRVAAAAAMAIATEDSCFKQSENEINVNAVADCEVSSSDVSVDEDAKALRGFCNLDEITMPDASGFEDMHEWLQSMVDEPLRSPTFVTYVRDWNFVEDDAEVSLWSFSI 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04402 246 Pfam AP2 domain 61 112 IPR001471 GO:0003700|GO:0006355
Spst3g04402 246 SUPERFAMILY DNA-binding domain 62 122 IPR016177 GO:0003677
Spst3g04402 246 PRINTS Ethylene responsive element binding protein signature 86 102 IPR001471 GO:0003700|GO:0006355
Spst3g04402 246 PRINTS Ethylene responsive element binding protein signature 63 74 IPR001471 GO:0003700|GO:0006355
Spst3g04402 246 MobiDBLite consensus disorder prediction 1 20 - -
Spst3g04402 246 ProSiteProfiles AP2/ERF domain profile. 62 120 IPR001471 GO:0003700|GO:0006355
Spst3g04402 246 CDD AP2 63 122 IPR001471 GO:0003700|GO:0006355
Spst3g04402 246 SMART rav1_2 62 126 IPR001471 GO:0003700|GO:0006355
Spst3g04402 246 Gene3D AP2/ERF domain 62 121 IPR036955 GO:0003700|GO:0006355
Spst3g04402 246 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 13 244 IPR045277 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04402 Spst-Chr3 95603012 95603752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04402 41 244 AP2-EREBP Transcription Factor Family AT5G51990 50.485 2.71e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst3g04402 AP2 3.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04402 - - pvu:PHAVU_003G212800g 400.593
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04402 3 95603012 95603752 Spst3g04402 3 95603012 95603752 ECH
Spst3g04402 3 95603012 95603752 Spst2g00344 2 2674194 2677982 PCT