Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04394 ATGGCATCCAATCACGACATGGATCGAAATGAAGACGGTGGAACAACAGACCTCAGTACCTGCGACGCAGACAAAGATTCATCCCCACTCACCAACCTCACTGGGCTCTCTAAACACGTCCAAGACAACACCGAAGGCTACCAAATTTTGCCTCTCAAAAAGGAGGACCCAATGGATTCTGACCTTGACCTAGACTCCAATGCGCTGCCTTCTATACCACTTTCGCTCAAATCGCCAAGCAGGCGCTCTTCCACCAAGGACCACCACACCAAAATCGAAGGTCGCGGCCGCAGGATCCGAATACCCGCTGCCTGCGCCGCTAGGATCTTCCAGCTCACCCGAGAGCTGGGACATAAATCCGATGGTGAAACCGTCCAGTGGCTCTTAGAGCACTCCGAGCAGGCCATCATAAAAGCCACCGGCACTGGAACAGTTCCGGCCATAGCTGTCTCCATCGGCGGCACACTCAAAATCCCAACTTCGTCCATATCTGACAACGAAGGCACATCCAACAAGAAACGGAAACGCCCTTCCAACAGCGACTTAGTGGACATAAAGGAGACAGTGTCGCAGACATCGGGTCTTGCTCCGGTTCAAGTGCCCCAAGGTCTGGTCCCGGTCTGGGCGGTAACCAACCCCAGCATGGTGGTCCCCACTAACACATTCTGGATGATCTCGCAGGCTGCGTCCACAAGCCACCCCTTGGGTGGAGTTATGAGCCCGGCAAGCCAGCAGCATCAGCTATGGGCTCCGACTCCCTCCGTGTTCAACTTGGCCGCTAGGCCCATATTGCCTCTGATGACAACGTGCAGTAACGGTTCTAACTCAGCAGCGGTGAAAAAGAGTGCGGTGGGTGCTAAGGTGGCAACCAGGTCCATCATGGCCCCTTCTGTTGGTTCCAGCAGCAGCAGTGGCAAGAGTCAGATGTTGAGGGATTTTTCCCTCCAAGTTTACAACAAGCAAGAGTTGCAATTGTTGGGCTGCTCTGGGACTCAGCCCAATCTATGA 1008 0.5437 MASNHDMDRNEDGGTTDLSTCDADKDSSPLTNLTGLSKHVQDNTEGYQILPLKKEDPMDSDLDLDSNALPSIPLSLKSPSRRSSTKDHHTKIEGRGRRIRIPAACAARIFQLTRELGHKSDGETVQWLLEHSEQAIIKATGTGTVPAIAVSIGGTLKIPTSSISDNEGTSNKKRKRPSNSDLVDIKETVSQTSGLAPVQVPQGLVPVWAVTNPSMVVPTNTFWMISQAASTSHPLGGVMSPASQQHQLWAPTPSVFNLAARPILPLMTTCSNGSNSAAVKKSAVGAKVATRSIMAPSVGSSSSSGKSQMLRDFSLQVYNKQELQLLGCSGTQPNL 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04394 335 ProSiteProfiles TCP domain profile. 85 139 IPR017887 -
Spst3g04394 335 Pfam TCP family transcription factor 84 176 IPR017887 -
Spst3g04394 335 MobiDBLite consensus disorder prediction 81 96 - -
Spst3g04394 335 MobiDBLite consensus disorder prediction 20 44 - -
Spst3g04394 335 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 54 324 IPR005333 GO:0003700
Spst3g04394 335 MobiDBLite consensus disorder prediction 1 96 - -
Spst3g04394 335 MobiDBLite consensus disorder prediction 159 180 - -
Spst3g04394 335 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04394 Spst-Chr3 95552342 95553349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04394 69 324 TCP Transcription Factor Family AT2G45680 44.932 3.65e-65 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Spst3g04394 TCP 4.9e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04394 - - gmx:100797827 362.844