Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04391 ATGCAAGAAGCAGGACTGGGAATGACTATGTTGAGCGCAGAAGTCTCAGCCGCCGACCACCACCACCGTCAAGTGAAGGCGGAGATAGCCACCCACCCACTTTACGAACAGCTTCTGGCTGCACACGTGTCATGCCTCCGAGTTGCCACACCCATCGACCAGTTGCCACTCATCGACGCTCAGTTATCGCACTTCAACAATCTCCTCCGCTCCTACGCCTCACACCATTCCCATTCCCTCTCTCCTCATGACCGACAAGAACTCGACAACTTCATGGCACAATATTTGATTGTGTTGTGTACGTTCAAAGAGCAGCTTCAGCAACATGTGAGGGTGCATGCCGTGGAGGCTGTGATGGCCTGCCGTGACATTGAAAGTACCTTGCAAGCTCTGACAGGAGTAAGTCTGGGAGAAGGATCAGGTGCAACAATGTCAGATGATGAAGAGGATTTTCAGATGGATGGGTCTTTAGATCAGTCTAGCGCTGACGGGCATGACATGATGGGATTTGGTCCTTTGCTTCCTACAGAATCTGAAAGGTCTCTCATGGAAAGAGTTCGTCAGGAGCTTAAGATTGAGCTCAAGCAGGGTTTTAAGTCAAGAATTGAAGATGTTAGGGAGGAAATATTAAGGAAACGGAGAGCTGGGAAATTACCTGGTGACACAACATCGGTTCTAAAGGCATGGTGGCAGCAACATGCTAAGTGGCCCTACCCAACTGAAGATGACAAAGCAAAACTTGTGGAGGAGACAGGGTTGCAGCTGAAGCAAATCAATAATTGGTTCATCAACCAAAGGAAACGCAACTGGCACAGCAACTCTCAATCGGTCACCTGGAGTATTCCCACTAAGGGTTTCAGTCTGGTGCAGGAGATAATAGGTGATGTGCTATACCATAAGATGGCTTACAAAAGTAATGGTTTAAATTCTTGA 933 0.4812 MQEAGLGMTMLSAEVSAADHHHRQVKAEIATHPLYEQLLAAHVSCLRVATPIDQLPLIDAQLSHFNNLLRSYASHHSHSLSPHDRQELDNFMAQYLIVLCTFKEQLQQHVRVHAVEAVMACRDIESTLQALTGVSLGEGSGATMSDDEEDFQMDGSLDQSSADGHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKAWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTWSIPTKGFSLVQEIIGDVLYHKMAYKSNGLNS 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04391 310 ProSiteProfiles 'Homeobox' domain profile. 209 272 IPR001356 GO:0003677
Spst3g04391 310 SMART HOX_1 211 276 IPR001356 GO:0003677
Spst3g04391 310 Pfam KNOX1 domain 25 65 IPR005540 GO:0003677|GO:0005634
Spst3g04391 310 Gene3D - 210 271 - -
Spst3g04391 310 Pfam Homeobox KN domain 229 268 IPR008422 GO:0003677|GO:0006355
Spst3g04391 310 SMART KNOX1_2 23 67 IPR005540 GO:0003677|GO:0005634
Spst3g04391 310 SMART KNOX2_2 78 133 IPR005541 GO:0003677|GO:0005634
Spst3g04391 310 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 62 272 - -
Spst3g04391 310 FunFam homeobox protein knotted-1-like 3 isoform X1 210 271 - -
Spst3g04391 310 Pfam KNOX2 domain 81 132 IPR005541 GO:0003677|GO:0005634
Spst3g04391 310 CDD homeodomain 212 273 IPR001356 GO:0003677
Spst3g04391 310 ProSiteProfiles ELK domain profile. 189 209 IPR005539 GO:0003677
Spst3g04391 310 SUPERFAMILY Homeodomain-like 211 279 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04391 Spst-Chr3 95531150 95537616 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04391 1 278 Homeobox Transcription Factor Family AT1G62990 75.439 6.73e-158 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Spst3g04391 KNOX2 1.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04391 - - gmx:100803130 528.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04391 3 95531150 95537616 Spst3g04391 3 95531150 95537616 ECH
Spst3g04391 3 95531150 95537616 Spst3g02583 3 74199498 74211534 PCT