Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04390 ATGCGGGCCAGGTTTCAACCGACTCAAACGTTAAAAGTATTTTGGGCATGGCACTTGCGCTCCGTGGTTCGTGTTTGTCCGAAAATAACTGGCAAGAGTGGCCCTGTCCGAGTAAATGTCACCGGAAGCATGGGTTGTCGGTGCCCACGGACACGTGTGAGGAGAATAGGCGATGGCAGTGAGGGTTTTGTGCCTCCAACACGAGCGGTTTCTGTGAGACACCCTGCAAACACTTCCTTCCTTCGTAAAGGTTCAGTCTACCCATTCAGGGCACAACACTCCGTGGTTGCCTTCCACATTCAAATCTTGTCAGTTCAGATCTTCACCAACAATCTGATACATATATCGCCTGTTATATCTGTGTCCACACAATTAGGGAAAATGGTGAGGGGGAAAACTCAGATGAAGCGCATCGAAAATGAAACGAGTAGGCAAGTGACCTTCTCCAAGAGAAGGAACGGGTTGCTTAAGAAGGCCTTCGAGCTTTCGGTGCTGTGCGATGCTGAAGTCGCACTCATTATCTTCTCCACCAGAGGGAGGCTTTACGAGTTCTCCAGTTCAAGTATAAACAAAACAGTTGAACGCTATCAAAGGAAAACCAAGGACCTGGGTGTCAGCAACAAAGGAATCCATGAAAATACACAGCTTATGAAGGACGGTGATATGAGCATGGCAATGAAAATCGAGCACCTAGAAAATTTCAGAAGGATGCTTTTGGGAGACGAATTGGAGACATGCAGTATTGGCGAGCTACAGCAGCTAGAGAACCAGCTCGAACACAGCTTGGACAAAATTAGGGCAAGAAAGAATCAATTGCTCAGGGAGCGAATTGAGAAGCTAAAAAAAGAGGAAAAGTGCTTACTCGAAGTAAATAAACGCTTACGCGAGCAGGTTATTATCATTCTTCGCTCGTTCTTGAGTGGTGAGGATGTGGAAGTCGTCACAGAAAAAGGGGAAGAAGAGGTGGAGACGGAGTTATTCATAGGAAGACCGGATAAACGAATGGCGCTAAAGTTGAAACCTGCAAGCCCTGATAGTGCTCATAAGTACATAATGTAA 1059 0.4636 MRARFQPTQTLKVFWAWHLRSVVRVCPKITGKSGPVRVNVTGSMGCRCPRTRVRRIGDGSEGFVPPTRAVSVRHPANTSFLRKGSVYPFRAQHSVVAFHIQILSVQIFTNNLIHISPVISVSTQLGKMVRGKTQMKRIENETSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSTRGRLYEFSSSSINKTVERYQRKTKDLGVSNKGIHENTQLMKDGDMSMAMKIEHLENFRRMLLGDELETCSIGELQQLENQLEHSLDKIRARKNQLLRERIEKLKKEEKCLLEVNKRLREQVIIILRSFLSGEDVEVVTEKGEEEVETELFIGRPDKRMALKLKPASPDSAHKYIM 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04390 352 ProSitePatterns MADS-box domain signature. 130 184 IPR002100 GO:0003677|GO:0046983
Spst3g04390 352 Pfam K-box region 215 298 IPR002487 GO:0003700|GO:0005634|GO:0006355
Spst3g04390 352 FunFam Agamous-like MADS-box protein AGL13 140 206 - -
Spst3g04390 352 Gene3D - 140 219 IPR036879 GO:0003677|GO:0046983
Spst3g04390 352 CDD MADS_MEF2_like 130 197 IPR033896 GO:0000977|GO:0045944
Spst3g04390 352 ProSiteProfiles K-box domain profile. 214 304 IPR002487 GO:0003700|GO:0005634|GO:0006355
Spst3g04390 352 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 137 184 IPR002100 GO:0003677|GO:0046983
Spst3g04390 352 PRINTS MADS domain signature 150 165 IPR002100 GO:0003677|GO:0046983
Spst3g04390 352 PRINTS MADS domain signature 130 150 IPR002100 GO:0003677|GO:0046983
Spst3g04390 352 PRINTS MADS domain signature 165 186 IPR002100 GO:0003677|GO:0046983
Spst3g04390 352 PANTHER SERUM RESPONSE FACTOR HOMOLOG 130 292 - -
Spst3g04390 352 SMART madsneu2 128 187 IPR002100 GO:0003677|GO:0046983
Spst3g04390 352 ProSiteProfiles MADS-box domain profile. 128 188 IPR002100 GO:0003677|GO:0046983
Spst3g04390 352 Coils Coil 248 297 - -
Spst3g04390 352 SUPERFAMILY SRF-like 130 200 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04390 Spst-Chr3 95511841 95522428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04390 128 341 MADS-box Gene Family AT4G22950 58.447 1.80e-72 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Spst3g04390 K-box 4.8e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04390 - - vum:124828919 325.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04390 3 95511841 95522428 Spst3g04390 3 95511841 95522428 ECH