Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04382 ATGCTTACATATAGTTCTGCCTCTGGGTCACCCATCTTTCAGCGTCACCCATTTTCCGTAGCTAAAAACACCAGAAAACCCCATATTAGTTCCCACCTTGGTAGTGCTGTTGTTTGTGTTAGTGCTATGGGGAGGCAACCCTGCTGTGACAAACTTGGGGTGAAGAAAGGTCCTTGGACTGCAGAGGAAGACAAGAAGCTCATCAACTTCATTCTCACCAATGGCCAGTGCTGTTGGCGTGCTGTGCCAAAGCTTGCTGGCCTCAGGCGTTGTGGCAAGAGTTGTCGCCTTCGTTGGACTAATTATCTTCGTCCAGACTTGAAGAGAGGACTCCTCACAGAAGCAGAGGAGCAACTTGTTATCGATCTCCATGCCCGTCTTGGCAACAGGTGGTCCAAAATTGCTTCCAGGTTACCCGGAAGAACAGACAATGAGATTAAAAATCATTGGAACACACATATCAAGAAAAAACTGCTAAAGATGGGTATTGATCCCGTTACTCATGAACCTCTCAATAAACAAGCAGCATCTCAGGATAGTTCATCCTCCCCTTCAGAGCATTTTCCACAATCTGGAAATAACCTGGATCAGGTGAAGGAAACTGACGGGGTTCTCAACTCAGAGGAGAATTCAAGTTCATCCCAAGCTGAAAATTCTTCTGGGGATGATTCACTTGCGCTAGATACCATTTGCAGTGAGGATTTTCTATTAAACACCCTGTGGCTGGATGAAACTCCTCTGATGGAAGCATTATGGGACACAACAACCAAACTAGAGAATACTAATAATAACATGGGTTTGCTACCATCTTGGGAGGACAATTGCGCTTGGTTATTGGACTGTCAGGACTTTGGTATTCATGATTTCGGGTTTAACTGCCTCAACGAGATAGAGTCAAATGCACTGCAGACTATAGAAATGAAGGAAGAGGGGCATTAA 939 0.4505 MLTYSSASGSPIFQRHPFSVAKNTRKPHISSHLGSAVVCVSAMGRQPCCDKLGVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLTEAEEQLVIDLHARLGNRWSKIASRLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHEPLNKQAASQDSSSSPSEHFPQSGNNLDQVKETDGVLNSEENSSSSQAENSSGDDSLALDTICSEDFLLNTLWLDETPLMEALWDTTTKLENTNNNMGLLPSWEDNCAWLLDCQDFGIHDFGFNCLNEIESNALQTIEMKEEGH 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04382 312 Gene3D - 113 187 - -
Spst3g04382 312 SUPERFAMILY Homeodomain-like 53 150 IPR009057 -
Spst3g04382 312 FunFam MYB transcription factor 53 109 - -
Spst3g04382 312 SMART sant 55 105 IPR001005 -
Spst3g04382 312 SMART sant 108 156 IPR001005 -
Spst3g04382 312 ProSiteProfiles Myb-like domain profile. 51 103 IPR001005 -
Spst3g04382 312 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 43 220 - -
Spst3g04382 312 Gene3D - 54 109 - -
Spst3g04382 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 104 158 IPR017930 -
Spst3g04382 312 MobiDBLite consensus disorder prediction 172 223 - -
Spst3g04382 312 FunFam MYB transcription factor 112 188 - -
Spst3g04382 312 ProSiteProfiles Myb-like domain profile. 104 154 IPR001005 -
Spst3g04382 312 CDD SANT 58 103 IPR001005 -
Spst3g04382 312 CDD SANT 113 154 IPR001005 -
Spst3g04382 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 103 IPR017930 -
Spst3g04382 312 Pfam Myb-like DNA-binding domain 56 103 IPR001005 -
Spst3g04382 312 Pfam Myb-like DNA-binding domain 113 153 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04382 Spst-Chr3 95460782 95462779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04382 43 291 MYB Transcription Factor Family AT4G22680 60.526 6.65e-101 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst3g04382 Myb_DNA-binding 3.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04382 K09422 - gmx:100786965 485.723