Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04354 ATGGGGTCCACCATGAGTTCGGGTAAAGAGTGCTTTGGATGGAGTAAGGGCCGACAAAGAGCATCTTCCGATGCATGGGTTTTATTTACGCACGGGAGTTTGCCTGTCAGCGCCACCCACGCGTCTCCAACACTCTGTAATATGCGCTCATTGGTCAACACCCTGCTCTCCACCAACCCTTACACCCTGGCTTCCCCCTCCTCTCTTAATTCCTTTCTTCTTCCACACCACACCTACTCCTACTACTCTATACTATTACCGCACCCTTCCCCTTCACAATTCTCATCCATTAATTCCTTTACCTCACCACTTGGAAATATTAACAGAAGTGAGGAGAGAGTAGTGGAGGAGGGAGAAGTCCGTGCAAGACTTGGAATTGACCCGAAAGAAACGGGTGAAACGCATGAGTCAGGCTTATGGCAGGTGGGCCTGAATTTTAAGACACTCAATTATACATTGAAGGATAGAATCAGAATGGATCCAATCACAGCACGTGGTCACTCCCTTCCCCCTCCTTTCCACACAAGAGATCTCCATCTGCACCACCAACCGCAACAGCACCAATTCCAAACCTTAAACCAAGGCACTGATGACGAGCACAGCGGAAGCAGCAGCGCGCAGAAAAGGGAACGCGAGGAGAACAACGGCAACAACAACGATGAAGGTGCTGGCGAGGCTGAGATAACAAGAAGACCTCGCGGAAGACCAGCCGGGTCCAAAAACAAACCGAAGCCACCCATTATCATCACTCGCGACAGCGCAAACGCCATGAGAACCCACATGATGGAGGTGGCAGACGGGTGCGACATCGTGGAAAGCGTGTCTGAGTTCGCGAGGAAACGCCAGAGAGGGGTTTGCATCATGAGTGGCACTGGCACAGTCACCAACGTCACTCTCAGGCAACCGGCTTCTTCCGGTGCGGTTGTCACTCTCCATGGAAGGTTCGAGATTTTGTCCCTCAACGGATCGTTCCTTCCACCGCCCGCCCCACCGGCTGCATCCGGTTTGACCATTTATTTGGCCGGTGGCCAGGGACAGGTGGTGGGAGGGAGTGTGGTTGGGACACTCGTTGCTTCGGGGCCTGTGGTGATCATGGCTGCTTCGTTCAGCAACGCTGCTTATGAGAGGCTTCCTTTGGAGGATGAAGACCCTTCGCTGCAAATGCAAGGAGGCTCAATTGGGTCACCCGGTGCAAGTGGTGTTGGTCAGTCACAGCTTCTAGGAGGAGGGGATGCAACTGCTCCACTTTTCCATGGTTTGCCTCCTAACCTTCTCAATTCTGTCCAAATGCCATCTGAACCATTCTGGGCATCCAATCGCCCACCCTTCTAA 1332 0.5285 MGSTMSSGKECFGWSKGRQRASSDAWVLFTHGSLPVSATHASPTLCNMRSLVNTLLSTNPYTLASPSSLNSFLLPHHTYSYYSILLPHPSPSQFSSINSFTSPLGNINRSEERVVEEGEVRARLGIDPKETGETHESGLWQVGLNFKTLNYTLKDRIRMDPITARGHSLPPPFHTRDLHLHHQPQQHQFQTLNQGTDDEHSGSSSAQKREREENNGNNNDEGAGEAEITRRPRGRPAGSKNKPKPPIIITRDSANAMRTHMMEVADGCDIVESVSEFARKRQRGVCIMSGTGTVTNVTLRQPASSGAVVTLHGRFEILSLNGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGTLVASGPVVIMAASFSNAAYERLPLEDEDPSLQMQGGSIGSPGASGVGQSQLLGGGDATAPLFHGLPPNLLNSVQMPSEPFWASNRPPF 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04354 443 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 198 437 IPR014476 GO:0003680
Spst3g04354 443 Pfam Plants and Prokaryotes Conserved (PCC) domain 258 371 IPR005175 -
Spst3g04354 443 Gene3D - 257 388 - -
Spst3g04354 443 MobiDBLite consensus disorder prediction 202 234 - -
Spst3g04354 443 ProSiteProfiles PPC domain profile profile. 254 390 IPR005175 -
Spst3g04354 443 FunFam AT-hook motif nuclear-localized protein 257 384 - -
Spst3g04354 443 MobiDBLite consensus disorder prediction 184 201 - -
Spst3g04354 443 CDD DUF296 258 369 IPR005175 -
Spst3g04354 443 SUPERFAMILY AF0104/ALDC/Ptd012-like 254 385 - -
Spst3g04354 443 MobiDBLite consensus disorder prediction 162 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04354 Spst-Chr3 95166531 95171646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04354 159 443 AT-hook Motif Nuclear Localized (AHL) Family AT2G45430 54.601 2.95e-82 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04354 - - gmx:100807581 463.766