Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04352 ATGGAATATGAAAGGAGGCAGAAGGTATTTGAGGATGATATTGAAAGATCTACCACAGAAGCACAACATCGGATTTCAGAGATCCAAAAGAACTGTTCGGATTCATTGGAGACAGAAAAATTGAACTATCAGAAAGACTATAAGGAATCAATTAAGATGCTGGAAGAGAAAGTGATGCAGAATAAGAAAAAGTACGAGGAATTTTGTATGACATCTACCAGAGAGATGACCATTGTACCTGCTGAGGAAATAGTCATTCTGAAAAAATTACTTCAGAAAGAGACTCTTTTAAGAAATGCTACCGCAAAGGAGATAAATCATCTGAAAAATCAAATGGCAGAACTGAAGATGTTGGAGGCATCAAGAGAGTCAGATATCTTAAAACTTCGTAAGATGTTGGAAGATGAGACACACCAGAAAGAGAAACTCAAAGGAGAAATAGTAAGATTGCGAAGTCAACTGCTGCAATTAGGTTCTGAAGTTGGAAAAACACAGACTTGTGGAGTTGGATTTGAGAAAGTTGCTGGTGATTTAGATTATTCTCCCACTTTCCTAGTTAAGCAACAACAGCGAGTTAGGGCAAATGGAGAGAAGGCCTCTGTTGCCAAGCTCTTTGAACATGGCAGGACATTGCAGAAGATTCTGTCATTGCTTGAAGCAGAAGATCTTGATGCGCAAATCAATGCCGTGAAAATAATAACAAATTTAACTTCTGAAGAAAGAAACCAGAAGAAAATTGTGGAAGCAGGTGGACTTACGTCCTTGCTCACACTGCTTAAGAACTCAAAAGATGAAACCACTCAAAGAGTTGCAGCAAGCGCCATAGCAAATTTGGCGATGAATGAAACCAATCAAGATCTCATTGCGGCTCAAGGAGGCATTAGTTTACTATCAATGACAGCAACAATTGCCGAAGATCCTCAGACCCTTCGAGTGGTTGCTGGAGCAATTGGTAATCTTTGTGGCAATGATAAACTACAAATAAAGATAAGGGATGAAGGTGGTATGAAGGCACTGCTGGGAATGCTCAGATTCAGACATGGCGACGTAGATACCCAGATTGCCCGCGCAATAGCCAATTTTGCAAAATGCGAGTCTAAAGCATCTTCTCAAGGGACAAAGGTTGGAAGGTCTTTACTTATTGCGGACGGTTTGCTTCCATGGATAGTGAAAAACGCAAATAATGAAGTCTCATTAGTTAGGCGTCATATTGAGATTGTTCTCTGCCACTTAGCACAAAATGAAGCAAATGCAAGAGACATGATTAGTGGAGGTGCAATAGGAGAGTTGGTTCGAGTCTCAAGAGATTGTTCAAGAGAAGACATAAGGATTCTTGCACGTGAAACATTAATCTCCAACCCCGCATTCCAAGCTGAAATTAGGCGTTTAGGGATAGAATAA 1401 0.4019 MEYERRQKVFEDDIERSTTEAQHRISEIQKNCSDSLETEKLNYQKDYKESIKMLEEKVMQNKKKYEEFCMTSTREMTIVPAEEIVILKKLLQKETLLRNATAKEINHLKNQMAELKMLEASRESDILKLRKMLEDETHQKEKLKGEIVRLRSQLLQLGSEVGKTQTCGVGFEKVAGDLDYSPTFLVKQQQRVRANGEKASVAKLFEHGRTLQKILSLLEAEDLDAQINAVKIITNLTSEERNQKKIVEAGGLTSLLTLLKNSKDETTQRVAASAIANLAMNETNQDLIAAQGGISLLSMTATIAEDPQTLRVVAGAIGNLCGNDKLQIKIRDEGGMKALLGMLRFRHGDVDTQIARAIANFAKCESKASSQGTKVGRSLLIADGLLPWIVKNANNEVSLVRRHIEIVLCHLAQNEANARDMISGGAIGELVRVSRDCSREDIRILARETLISNPAFQAEIRRLGIE 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04352 466 Coils Coil 126 160 - -
Spst3g04352 466 SMART arm_5 197 238 IPR000225 GO:0005515
Spst3g04352 466 SMART arm_5 323 363 IPR000225 GO:0005515
Spst3g04352 466 SMART arm_5 239 280 IPR000225 GO:0005515
Spst3g04352 466 SMART arm_5 281 322 IPR000225 GO:0005515
Spst3g04352 466 PANTHER VACUOLAR PROTEIN 8 196 462 IPR045156 GO:0043495|GO:0071562
Spst3g04352 466 Gene3D - 185 305 IPR011989 -
Spst3g04352 466 Coils Coil 98 118 - -
Spst3g04352 466 Pfam Armadillo/beta-catenin-like repeat 241 279 IPR000225 GO:0005515
Spst3g04352 466 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 209 251 IPR000225 GO:0005515
Spst3g04352 466 Gene3D - 306 464 IPR011989 -
Spst3g04352 466 SUPERFAMILY ARM repeat 203 450 IPR016024 -
Spst3g04352 466 Coils Coil 44 64 - -
Spst3g04352 466 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 250 293 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04352 Spst-Chr3 95159362 95163620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04352 209 365 U-box Gene Family AT5G62560 28.025 3.85e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04352 - - pvu:PHAVU_003G216300g 704.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04352 3 95159362 95163620 Spst3g04352 3 95159362 95163620 ECH