Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04342 ATGGCGGCAGATTCATCACTCCGGGTGGCGACAACCACTCTTTGCAACCTCAACGGGTCTCAGAGAAGACCAACCCCTCTCTCTCCACTTCGCTTCATGGGTTTTCGCCCACGACCCTCTCACTCTCTCACTTCCTCTTCCCTCTCACACTTTTTCGGGAGCACACGCATTAACTCCAATTCTCCCTTTCCACGCCAACATGCTCCCAGAAGACCCTTTTCTATTTTCGCCATGGCCGCTGATGACACAAAGAGGAGTGTTCCATTGAAAGATTATCGCAACATAGGTATCATGGCTCACATAGATGCTGGAAAGACTACTACGACTGAACGAATTTTGTATTATACGGGAAGGAACTACAAAATTGGAGAAGTGCATGAGGGAACTGCAACCATGGACTGGATGGAACAAGAACAAGAAAGAGGGATTACCATTACTTCTGCTGCAACCACTACATTCTGGGAGAAGCATCGGATCAACATTATTGATACTCCTGGTCACGTCGACTTCACTTTAGAAGTGGAGCGAGCTCTTAGGGTGTTGGATGGAGCTATATGCTTGTTTGACAGTGTTGCTGGTGTTGAACCACAATCAGAAACTGTGTGGAGGCAGGCTGATAAATATGGGGTTCCACGAATTTGTTTTGTTAACAAAATGGACCGTCTTGGAGCAAACTTTTATCGAACAAGAGACATGATAGTAACAAATTTGGGTGCTAACCCACTTGTAATTCAGTTACCAATTGGTTCAGAAGATAGCTTTAAGGGAGTTGTAGACCTTGTTAGGATGAAAGCTATAGTTTGGTCTGGAGAAGAGCTGGGTGCCAAGTTTGAGATTATAGATATTCCAGAAGATCTTCAAGAGCAGGCACAAGATTACCGATCCCAGATGATAGAAACCATAGTTGAGTTTGATGACCAGGCTATGGAGAACTACCTGGAAGGAATTGAACCGGATGAAGAAACTATAAAAAAATTAATTAGGAAGGGAACCATAGCAGCCAGTTTTGTTCCAGTGATGTGTGGTTCAGCTTTCAAAAACAAGGGTGTCCAACCGTTGCTCGATGCTGTAGTTGATTATCTACCATCACCACTTGACTTGCCAGCAATGAAGGGCAGCGACCCAGAAAACCCAGAAGTGATAATAGAGAGGGTAGCAAGTGATGATGAACCTTTTGCTGGATTAGCTTTCAAGATCATGAGTGATCCATTTGTAGGCTCCCTTACATTTGTCAGGGTATATGCTGGAAAGCTAAGTGCTGGGTCTTATGTACTCAATTCAAACAAAGGGAAAAAGGAGAGAATTGGTAGACTTCTAGAAATGCATGCAAACAGCAGAGAGGATGTGAAAGTAGCTTTGGCAGGTGATATTATCGCTCTTGCAGGTTTGAAAGATACTATTACAGGTGAAACATTGTGTGACCCTGATAATCCAATCGTGCTCGAGCGAATGGACTTCCCTGATCCTGTTATTAAGGTGGCAATTGAACCCAAGACTAAAGCTGATGTTGACAAGATGGCAACTGGTTTAATCAAGCTTGCACAGGAAGACCCTTCTTTCCATTTCTCCCGTGATGAAGAGATAAACCAGACTGTGATTGAGGGAATGGGAGAATTACATCTTGAAATCATTGTTGATCGGCTAAAAAGAGAATTTAAGGTGGAAGCTAATGTTGGTGCCCCCCAAGTAAACTACCGGGAAAGCATTTCCAAAATTTCAGAAGTGAAGTATGTGCACAAGAAACAATCAGGTGGACAAGGTCAGTTTGCAGATATCACTGTAAGGTTTGAACCCATGGATCCTGGTAGTGGATATGAGTTCAAGAGTGAAATCAAAGGAGGTGCTGTACCAAAAGAGTACATTCCTGGGGTGATGAAAGGATTGGAAGAGTGTATGAGCAACGGAGTGCTAGCTGGCTTTCCAGTTGTTGATGTACGAGCAGTACTCGTAGATGGATCTTACCATGATGTAGATTCAAGTGTGTTGGCATTCCAGTTGGCAGCAAGAGGAGCATTTAGGGAAGGAGTTAGAAAAGCCGGACCGAGGATGCTTGAACCTATAATGAAGGTTGAAGTTGTTACTCCTGAAGAACATCTAGGTGATGTAATTGGTGATCTCAACTCAAGAAGAGGACAGATCAACAGTTTTGGTGACAAACCAGGTGGCCTTAAGGTGGTTGATTCCCTGGTACCTCTTGCTGAGATGTTCCAGTACGTCAGCACACTTAGGGGGATGACAAAGGGCCGTGCATCCTACACAATGCAATTAGCCATGTTTGATGTGGTGCCACAGCACATTCAGAACCAACTTGCCTCAAAAGAGCAAGAAGTTGCCGCTTAA 2340 0.441 MAADSSLRVATTTLCNLNGSQRRPTPLSPLRFMGFRPRPSHSLTSSSLSHFFGSTRINSNSPFPRQHAPRRPFSIFAMAADDTKRSVPLKDYRNIGIMAHIDAGKTTTTERILYYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTFWEKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFYRTRDMIVTNLGANPLVIQLPIGSEDSFKGVVDLVRMKAIVWSGEELGAKFEIIDIPEDLQEQAQDYRSQMIETIVEFDDQAMENYLEGIEPDEETIKKLIRKGTIAASFVPVMCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGSDPENPEVIIERVASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGKLSAGSYVLNSNKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDPDNPIVLERMDFPDPVIKVAIEPKTKADVDKMATGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRESISKISEVKYVHKKQSGGQGQFADITVRFEPMDPGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRAVLVDGSYHDVDSSVLAFQLAARGAFREGVRKAGPRMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDSLVPLAEMFQYVSTLRGMTKGRASYTMQLAMFDVVPQHIQNQLASKEQEVAA 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04342 779 CDD EFG_III 487 562 IPR009022 -
Spst3g04342 779 SMART EFG_IV_2 562 680 IPR005517 GO:0005525
Spst3g04342 779 CDD EFG_mtEFG1_IV 565 680 IPR005517 GO:0005525
Spst3g04342 779 Hamap Elongation factor G [fusA]. 88 774 IPR004540 GO:0003746|GO:0005525|GO:0006414
Spst3g04342 779 Gene3D - 83 373 IPR027417 -
Spst3g04342 779 FunFam Elongation factor G 374 489 - -
Spst3g04342 779 FunFam Elongation factor G 567 697 - -
Spst3g04342 779 PRINTS GTP-binding elongation factor signature 160 170 IPR000795 GO:0003924|GO:0005525
Spst3g04342 779 PRINTS GTP-binding elongation factor signature 140 148 IPR000795 GO:0003924|GO:0005525
Spst3g04342 779 PRINTS GTP-binding elongation factor signature 176 187 IPR000795 GO:0003924|GO:0005525
Spst3g04342 779 PRINTS GTP-binding elongation factor signature 212 221 IPR000795 GO:0003924|GO:0005525
Spst3g04342 779 PRINTS GTP-binding elongation factor signature 94 107 IPR000795 GO:0003924|GO:0005525
Spst3g04342 779 NCBIfam elongation factor G 85 774 IPR004540 GO:0003746|GO:0005525|GO:0006414
Spst3g04342 779 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 363 IPR027417 -
Spst3g04342 779 SUPERFAMILY EF-G C-terminal domain-like 685 774 IPR035647 -
Spst3g04342 779 SUPERFAMILY Ribosomal protein S5 domain 2-like 561 681 IPR020568 -
Spst3g04342 779 PANTHER TRANSLATION ELONGATION FACTOR G-RELATED 79 775 - -
Spst3g04342 779 Gene3D Elongation Factor G (Translational Gtpase), domain 3 490 566 - -
Spst3g04342 779 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 90 365 IPR000795 GO:0003924|GO:0005525
Spst3g04342 779 CDD EFG_mtEFG_II 392 474 - -
Spst3g04342 779 Pfam Elongation Factor G, domain III 486 559 IPR041095 -
Spst3g04342 779 NCBIfam small GTP-binding protein domain 92 262 IPR005225 GO:0005525
Spst3g04342 779 SUPERFAMILY Translation proteins 346 486 IPR009000 -
Spst3g04342 779 SMART EFG_C_a 682 770 IPR000640 -
Spst3g04342 779 FunFam Elongation factor G 83 374 - -
Spst3g04342 779 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 133 148 IPR031157 -
Spst3g04342 779 CDD EF-G 94 364 - -
Spst3g04342 779 Pfam Elongation factor G C-terminus 683 769 IPR000640 -
Spst3g04342 779 FunFam Elongation factor G 490 566 - -
Spst3g04342 779 SUPERFAMILY EF-G C-terminal domain-like 486 563 IPR035647 -
Spst3g04342 779 Gene3D - 686 757 - -
Spst3g04342 779 Gene3D Translation factors 374 489 - -
Spst3g04342 779 Pfam Elongation factor Tu domain 2 406 473 IPR004161 GO:0005525
Spst3g04342 779 FunFam Elongation factor G 686 757 - -
Spst3g04342 779 CDD EFG_mtEFG_C 685 763 IPR035649 -
Spst3g04342 779 Hamap Elongation factor G, chloroplastic. 82 779 IPR030848 GO:0003746|GO:0006414|GO:0009507
Spst3g04342 779 Pfam Elongation factor Tu GTP binding domain 91 363 IPR000795 GO:0003924|GO:0005525
Spst3g04342 779 Gene3D - 567 770 IPR014721 -
Spst3g04342 779 Pfam Elongation factor G, domain IV 561 679 IPR005517 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04342 Spst-Chr3 95066857 95070691 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04342 80 750 Eukaryotic Initiation Factors Gene Family AT1G56070 25.791 1.91e-42 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04342 K02355 - gmx:102663021 1459.51