Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04338 ATGAACACATTTTCACATGTACCTCCAGGCTTTCGGTTTCATCCAACCGATGAAGAGCTCGTAGGTTACTACCTTAGGAAGAAGGTAGCGTCTAAAAGGATTGATCTAGATGTCATCAAAGATGTTGATCTCTATAAAATTGAACCATGGGATCTTCAAGAGTTATGTAAAATAGGAACAGATGAACAAAGTGACTGGTATTTCTTCAGTCATAAAGATAAGAAATACCCAACTGGAACTCGCACAAATAGAGCTACAAAAGCAGGATTCTGGAAAGCCACGGGAAGAGACAAGGCAATATACTCTAAGCATTGCCTGATTGGGATGAGAAAGACACTAGTGTTTTACAAAGGAAGAGCCCCAAATGGACAGAAGTCTGATTGGATCATGCACGAGTACAGGCTAGAAACTAATGAAAATGGAACTCCTCCGGAAGAAGGCTGGGTTGTGTGTAGAGTGTTTAAGAAGCGAATGACTACAATGCAGAAAGTGGGAGAGTATGATCAATCACCCTGTTGGTACGACGAGCAAGTTTCCTTCATGCAAGATCTTGAATCCCCCAGACGCATTTCTCAGCATTATGCATCATACCATCAGCACCCCCCCTGCAAGCCTGAGCTCATGGAATTGCAATACAACAACATACCCCACGATGCATTCCTCCAACTTCCACAACTTGAAAGCCCCAAAGTTGCTCACTCAGCAGCCAGTTTGAGTTGCAGCTCAGTTGTCCCTTTTGGTTATGAAAACAACAACAACAACAACAATGGAAGCACCTTGCAGTTCTCATCACTCACTCAGGAAGAACAGATTCAATATTGCCACCAACAAAGTCAAAATTCCCTCTATTGTACCAATGATAATGCGGTTGACCAAGTCACTGATTGGCGAGTACTTCACAAATTTGTTGCTTCTCAGCTCAGTCACAACCAAGATGTTTCCAAGGAGACCAGTTATTCCAATGCACCTATCTTCCATGTGGCTGAACAAATTTCTATGGTTGACAATGGATCTAAAAAGGAGCAAGTTTCCCAGGAATATGCTTCAACATCTACCTCCAGCTGCCAAATTGACCTGTGGAAGTGA 1086 0.4273 MNTFSHVPPGFRFHPTDEELVGYYLRKKVASKRIDLDVIKDVDLYKIEPWDLQELCKIGTDEQSDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYSKHCLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNENGTPPEEGWVVCRVFKKRMTTMQKVGEYDQSPCWYDEQVSFMQDLESPRRISQHYASYHQHPPCKPELMELQYNNIPHDAFLQLPQLESPKVAHSAASLSCSSVVPFGYENNNNNNNGSTLQFSSLTQEEQIQYCHQQSQNSLYCTNDNAVDQVTDWRVLHKFVASQLSHNQDVSKETSYSNAPIFHVAEQISMVDNGSKKEQVSQEYASTSTSSCQIDLWK 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04338 361 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Spst3g04338 361 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Spst3g04338 361 FunFam NAC domain-containing protein 16 160 - -
Spst3g04338 361 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 278 - -
Spst3g04338 361 Gene3D NAC domain 16 160 IPR036093 GO:0003677|GO:0006355
Spst3g04338 361 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04338 Spst-Chr3 95006176 95009054 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04338 1 361 NAC Transcription Factor Family AT1G12260 57.951 1.86e-139 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst3g04338 NAM 1.8e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04338 - - gmx:100783529 657.136