Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04333 ATGGATTTGAAGTCCTCTCATGTTTCTCCTGTTCTCACTGACCCTGTTCCCGTCAACAAGTCAAGGCTTCGAATGCATTCTAGTCTGCTAGCTTATTCCCAGCAAGATTCACCAGTCACTCCTGGGAAGTACTCAAGGAGCGGTTCAAGGAAAAGTACAGGTAGTGTCGATGATGTGAGGTCCAATGGTTTGTTGGATGCCATGAAGGCTTCTTCCCCTCCAAGGAAGAAGCTACTTAAAGGGTCCAGTGCTCAGGTTGCTTCAATTGACTTTGACATTGAAGACTATTATACATGGATGCTTGAATATCCTTCAGCACTAGACTCTTTTGAGAAAATCATTGACCTTGCACAGAATAAACAGATTGCCATGTTTCTAGACTATGACGGCACACTTTCCCCGATAGTAGATGATCCGGATTGTGCATTTATGTCCGAATCTATGCGTACAACTGTGAGAAGTGTGGCATCATATTTCCCCACAGCAATCATCAGTGGAAGAAGCCGTGACAAGGTTTTTGATTTTGTTAAACTAACAGAACTTTACTACGCTGGTAGTCACGGGATGGACATTATTGGCCCTGTTAGTGAGACTTTGTCCAAAAATCACCCAAATTGTATTAAATCTACTGACCATGAGGGAAAGGAACTAACTCTCTTCCAACCTGCGAGAGAATTCCTGCCTATGGTTGATGAGGTTTTTAGAACCCTCGTCGAGATTACTAAAGATATACAAGGCGCAAAAGTTGAAAACCACAAATTTTGCGTTTCTGTACATTATCGTAATGTAGAGGAGAATAGTTGGACAACAATTGGGCAACGTGTCCATGATGTCTTGCAAAATTACCCTCGTTTACGTTCAACTTATGGACGGAAGGTTTTAGAAGTCCGTCCTGTGGTTGATTGGAATAAAGGAAAAGCTGTTGAGTTTTTACTTGAATCCCTAGGATTAAATGATAGTGATAATGTGCTTCCCATTTACATTGGAGATGATAAAACTGATGAAGATGCATTCAAGGTTCTGCGAGACAGCAATAGAGGTTATGGGATTTTGGTTTCGTCGGTGAGGAAAGAAAGCAATGCATTTTACTCTCTCCGAGACCCCAGCGAGAACTATAAGACTATTTCTATGTTACGTGCAGGTCATGAAATTTCTCCAACTCTTAGTGAACTGGAAGAGACAAGAAAGAAGGAATGGAAAGAAGTAAACGCCAAAGATTATAATATGAATAGCATTTTATTTTATACACCAACTACATAG 1260 0.4087 MDLKSSHVSPVLTDPVPVNKSRLRMHSSLLAYSQQDSPVTPGKYSRSGSRKSTGSVDDVRSNGLLDAMKASSPPRKKLLKGSSAQVASIDFDIEDYYTWMLEYPSALDSFEKIIDLAQNKQIAMFLDYDGTLSPIVDDPDCAFMSESMRTTVRSVASYFPTAIISGRSRDKVFDFVKLTELYYAGSHGMDIIGPVSETLSKNHPNCIKSTDHEGKELTLFQPAREFLPMVDEVFRTLVEITKDIQGAKVENHKFCVSVHYRNVEENSWTTIGQRVHDVLQNYPRLRSTYGRKVLEVRPVVDWNKGKAVEFLLESLGLNDSDNVLPIYIGDDKTDEDAFKVLRDSNRGYGILVSSVRKESNAFYSLRDPSENYKTISMLRAGHEISPTLSELEETRKKEWKEVNAKDYNMNSILFYTPTT 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04333 419 FunFam Trehalose 6-phosphate phosphatase 229 385 - -
Spst3g04333 419 Gene3D - 122 210 IPR023214 -
Spst3g04333 419 Gene3D - 217 387 IPR023214 -
Spst3g04333 419 Pfam Trehalose-phosphatase 125 369 IPR003337 GO:0003824|GO:0005992
Spst3g04333 419 NCBIfam trehalose-phosphatase 120 378 IPR003337 GO:0003824|GO:0005992
Spst3g04333 419 NCBIfam HAD-IIB family hydrolase 124 343 IPR006379 -
Spst3g04333 419 CDD HAD_TPP 123 370 - -
Spst3g04333 419 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 33 379 IPR044651 GO:0004805|GO:0005992
Spst3g04333 419 MobiDBLite consensus disorder prediction 35 59 - -
Spst3g04333 419 FunFam Trehalose 6-phosphate phosphatase 122 211 - -
Spst3g04333 419 SUPERFAMILY HAD-like 123 379 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04333 Spst-Chr3 94913134 94915645 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04333 109 381 Trehalose Biosynthesis Gene Families AT1G23870 26.644 2.31e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04333 K01087 - qsa:O6P43_024315 556.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04333 3 94913134 94915645 Spst3g04333 3 94913134 94915645 ECH