Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04301 ATGGCTCCACTCTTCATCTCCTTGCAAATGTTCCTGGTTTTCAGTTGTTGCATATTATTGCATGCAACAACCGTGACATGCACAACCAAAATGGTGTCTTCCACAAACTCGTCCTTGTGGGTCGGACCTACCGGACGTAGAGTAATCACCGTCGACATTAACGGTGGAGGCCATTTCCGATCAGTCCAAGCCGCCGTCAATGCTGTCGCGGACAACAACAGCATGAACGTCCTTATTCAAATTAGCCCCGGATATTACATAGAGAAGGTGGTAGTGCCCGTGACGAAGCCGTACATTACATTTGAAGGAGCGGGAAGAGATGTGACGGTGATAGAATGGCATGATAGGGCCAGTGACCCTGGTCCCAACGGCCAACAACTGCGTACTTACAGAACAGCTTCTGTTACAGTTTTTGCCAACTATTTCTCTGCTAGGAATATCAGCTTCAAGAACACTGCTCCGGCGCCGATGCCGGGAATGGAGGGGTGGCAAGCGGCGGCGTTTCGCATTTCCGGTGACAAAGCCTATTTCTCCGGCTGCGGGTTCTACGGCGCACAAGACACTCTTTGCGACGATGCTGGTCGTCATTACTTCAAAGAATGTTACATCGAGGGTTCCATTGATTTCATTTTTGGAAATGGCAGGTCCATGTACAAGGATTGCAGGCTACACTCAATTGCCACGAGGTTTGGGTCAATAGCAGCCCAAGATAGGAGATCCCCATACCAGAAAACGGGCTTCGCATTCGTACGATGCAAGGTGACTGGAACAGGCCCGATTTATGTGGGCCGTGCAATGGGCGAGTACTCTAGGATTGTCTATGCCTACACCTACTTCGACAACATAGTTGCACATGGTGGTTGGGATGATTGGAACACATCCTACAATAACAAGACTGTGTTCTTTGGAGTGTACAAATGCTGGGGACCAGGTGCTGCGGCTGTACGTGGAGTCCCATTAGCCCAAGAGCTAGATTTTGAATCTGCCCATCCATTCCTGGTCAAGAGTTTTGTTAATGGGAGACACTGGATGGCACCCTCTGATGCTTAG 1050 0.4971 MAPLFISLQMFLVFSCCILLHATTVTCTTKMVSSTNSSLWVGPTGRRVITVDINGGGHFRSVQAAVNAVADNNSMNVLIQISPGYYIEKVVVPVTKPYITFEGAGRDVTVIEWHDRASDPGPNGQQLRTYRTASVTVFANYFSARNISFKNTAPAPMPGMEGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCRLHSIATRFGSIAAQDRRSPYQKTGFAFVRCKVTGTGPIYVGRAMGEYSRIVYAYTYFDNIVAHGGWDDWNTSYNNKTVFFGVYKCWGPGAAAVRGVPLAQELDFESAHPFLVKSFVNGRHWMAPSDA 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04301 349 FunFam Pectinesterase 44 346 - -
Spst3g04301 349 SUPERFAMILY Pectin lyase-like 46 346 IPR011050 -
Spst3g04301 349 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 44 344 - -
Spst3g04301 349 ProSitePatterns Pectinesterase signature 2. 203 212 IPR033131 -
Spst3g04301 349 Gene3D - 44 348 IPR012334 -
Spst3g04301 349 Pfam Pectinesterase 49 340 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04301 Spst-Chr3 94600912 94605132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04301 6 349 Carbohydrate Esterase AT5G47500 71.060 0.0 529
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04301 - - gmx:100796327 648.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04301 3 94600912 94605132 Spst3g04301 3 94600912 94605132 ECH