Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04298 ATGCCTAAATGTTTTGTTTGGTTGATGTTTTCGATTGCAGGTAAGGTTCACGGATCTCTCGCACGGGCTGGAAAAGTGAGAGGACAAACTCCTAAAGTGGCCAAGCAAGACAAGAAGAAGAAGCCACGCGGACGCGCTCACAAGCGAATGCAATACAACCGTCGATTCGTCACCGCCGGTAACATTATCTTCGTCTCTCTTTTCTATGATTTTCATATTGGTGGGATTCGGGAAGAAGCGTGGACCAAACTCGTCGGAGAAGTGAGGGGCGTAATTTAG 279 0.4767 MPKCFVWLMFSIAGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAGNIIFVSLFYDFHIGGIREEAWTKLVGEVRGVI 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04298 92 MobiDBLite consensus disorder prediction 24 50 - -
Spst3g04298 92 MobiDBLite consensus disorder prediction 34 50 - -
Spst3g04298 92 Pfam Ribosomal protein S30 15 58 IPR006846 GO:0003735|GO:0005840|GO:0006412
Spst3g04298 92 PANTHER 40S RIBOSOMAL PROTEIN S30/UBIQUITIN-LIKE PROTEIN FUBI 13 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04298 Spst-Chr3 94579670 94580293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04298 14 59 Cytoplasmic Ribosomal Protein Gene Family AT5G56670 95.652 5.74e-18 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04298 K02983 - vvi:100241142 95.9005