Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04296 ATGGATAGTAGACACAAATGCAAGCTTTGTTCAAGGTCTTTCACCAATGGCAGAGCCCTTGGTGGTCACATGAAGGCTCATCTCGCTACTCTCCCTCTTCCTCCAAAGCCTCAAACGTTGACTCACTCTTCCTTCTCTTATTCCTCTTCCTCAGACTCTGAACAAGAAACGCTCAAAGAAGATGATTCTCTTAGTTACGGGCTGAGGGAGAATCCTAAGAAGACAGTCAGAGCAACGGATCCTGAAGACAGAGAGAGCGAGACCGAGTCAAAGAACCCAACTCGCCAACGATCCAAGCGCAACCGGAAATCCACCATGCTGAAGCTCAGCTTCGTGGTGTCCACACCTCTCAACGCCGAACCCGAACCTGTGAGCTCAGTCTCCGACACCTCTCCTGAGGAAGACGTGGCCATGAGCCTCATGATGCTCTCCCGCGACAAGTGGAACGTAGCCACCAATGCGGGTCCACCTCAGAGATCAAAGAGGTGCTGCACCGGATCAGAGACCAAGCTCAAGAAACTCCGCGGGAAGCATCTCTGCCACACTTGCTGCAAATCCTTTCGATCCTCTCGCGCCTTGGGGAGTCACAGAACCATTTGTTGCCGTCAAGAGGAAGCTCAACATCAAAACAACAACAATAGTATTAAGGTTTTTGAATGTCCCTTTTGTTACAAAGTGTTCGGGTCGGGTCAAGCTCTCGGTGGTCACAAGAGATCTCACCTAATCCCTTCCTCCTCTTCAACAGTAAATGATTCCATCAAATTGAAACAGAGCTTCATAGATCTCAACTTGCCGGCGCCGGCCGAAGAGGACGATCTTAGTGTTGTCTCTGATGCCTAA 840 0.5012 MDSRHKCKLCSRSFTNGRALGGHMKAHLATLPLPPKPQTLTHSSFSYSSSSDSEQETLKEDDSLSYGLRENPKKTVRATDPEDRESETESKNPTRQRSKRNRKSTMLKLSFVVSTPLNAEPEPVSSVSDTSPEEDVAMSLMMLSRDKWNVATNAGPPQRSKRCCTGSETKLKKLRGKHLCHTCCKSFRSSRALGSHRTICCRQEEAQHQNNNNSIKVFECPFCYKVFGSGQALGGHKRSHLIPSSSSTVNDSIKLKQSFIDLNLPAPAEEDDLSVVSDA 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04296 279 ProSitePatterns Zinc finger C2H2 type domain signature. 220 240 IPR013087 -
Spst3g04296 279 Gene3D Classic Zinc Finger 175 240 - -
Spst3g04296 279 ProSiteProfiles Zinc finger C2H2 type domain profile. 5 32 IPR013087 -
Spst3g04296 279 SUPERFAMILY beta-beta-alpha zinc fingers 5 198 IPR036236 -
Spst3g04296 279 MobiDBLite consensus disorder prediction 29 107 - -
Spst3g04296 279 Pfam C2H2-type zinc finger 217 241 - -
Spst3g04296 279 Pfam C2H2-type zinc finger 4 29 - -
Spst3g04296 279 SMART c2h2final6 5 27 IPR013087 -
Spst3g04296 279 SMART c2h2final6 218 240 IPR013087 -
Spst3g04296 279 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 279 IPR044303 GO:0006355
Spst3g04296 279 MobiDBLite consensus disorder prediction 54 95 - -
Spst3g04296 279 MobiDBLite consensus disorder prediction 36 53 - -
Spst3g04296 279 ProSitePatterns Zinc finger C2H2 type domain signature. 7 27 IPR013087 -
Spst3g04296 279 ProSiteProfiles Zinc finger C2H2 type domain profile. 218 240 IPR013087 -
Spst3g04296 279 SUPERFAMILY beta-beta-alpha zinc fingers 216 241 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04296 Spst-Chr3 94530884 94531723 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04296 5 276 C2H2 Transcription Factor Family AT3G60580 35.880 3.57e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst3g04296 zf-C2H2_6 3.3e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04296 - - gmx:100806512 390.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04296 3 94530884 94531723 Spst3g04296 3 94530884 94531723 PCT