Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04284 ATGCGAAACGTTGTTCATAGTGCCTACAAGTATGTTTCGGAGCTTTGGCGCAAGAAGCAGTCCGATGTTATGAGATTCTTGCAGCGAGTGAGGTGCTGGGAGTACCGACAGCAACCTTCAATTGTTCGTTTGACAAGGCCTACTCGCCCAGACAAAGCTCGCCGCCTGGGTTATAAGGCTAAGCAGGGTTATGTCGTTTACCGAGTACGTGTTAGGAGGGGTGGCAGGAAGAGACCTGTTCCCAAAGGTATTGTTTATGGGAAGCCAACCAACCAAGGTGTTACTCAACTGAAGTTTCAGCGTAGCAAGAGGTCTGTTGCTGAGGAGCGAGCTGGAAGAAAGTTGGGTGGCCTCAGGGTCCTCAATTCTTACTGGGTGAATGAGGACTCGACCTACAAATATTTTGAAATTATTCTGGTTGATGTTGCCCACAGTGCTGTAAGAAATGATCCAAGAATCAACTGGCTCTGCAATCCAGTCCATAAACACAGGGAACTTCGTGGTCTTACTTCTGCTGGAAAGAGCAACAGAGGTTTACGTGGCAGAGGACATCTGTACCACAAAAATCGTCCATCCCGCAGGGCAACCTGGAAGAGAAACAACACCCTTTCTCTTCGTCGTTACCGCTGA 630 0.4857 MRNVVHSAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEIILVDVAHSAVRNDPRINWLCNPVHKHRELRGLTSAGKSNRGLRGRGHLYHKNRPSRRATWKRNNTLSLRRYR 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04284 209 ProSitePatterns Ribosomal protein L15e signature. 51 74 IPR020925 GO:0003735|GO:0005840|GO:0006412
Spst3g04284 209 PANTHER RIBOSOMAL PROTEIN L15 7 209 IPR000439 GO:0003735|GO:0005840|GO:0006412
Spst3g04284 209 MobiDBLite consensus disorder prediction 169 193 - -
Spst3g04284 209 FunFam Ribosomal protein L15 6 209 - -
Spst3g04284 209 Gene3D Ribosomal protein l15e 6 209 IPR024794 GO:0003735|GO:0005840
Spst3g04284 209 SMART Ribosomal_L15e_2 7 198 IPR000439 GO:0003735|GO:0005840|GO:0006412
Spst3g04284 209 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 6 200 IPR012678 GO:0003735|GO:0005840|GO:0006412
Spst3g04284 209 Pfam Ribosomal L15 7 195 IPR000439 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04284 Spst-Chr3 94439419 94441359 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04284 8 209 Cytoplasmic Ribosomal Protein Gene Family AT4G16720 92.574 1.05e-126 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04284 K02877 - gmx:100306052 391.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04284 3 94439419 94441359 Spst3g04284 3 94439419 94441359 PCT