Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04279 ATGGCACCAAAGATCATCAACAATGGAACAGGCAAGAGATCAGCAATTAACAGAGGTTCATGGACCCCAGAGGAGGACAGAAAGCTTGCCCAATGCATTGAAACTCATGGTGCAAAGAGGTGGAAGACTGTTGCACTCAAATCAGGTTTGAAGAGATGTGGAAAGAGTTGCAGGCTGAGATGGTTAAACTATCTGAGGCCTAATATCAAGAGGGGAAACATATCAGATGAAGAAGAGGATTTGATTCTTAGGCTTCACAGACTTCTGGGAAACAGGTGGTCTTTGATAGCTGGTAGGCTTCCAGGACGAACAGACAATGAAATTAAGAATTATTGGAATTCTCATTTGTGCAAAAAGCTGAATAAAAAAGAGGAGAGACCAGAATCTTCAACAACACAGGAAATTACTGGCCAGAATCTGAATGCTGGGCACAACAACCCTGCAATGTCAGAGAACGAGGTTGCAACTAATGAAAGTGGCACCTTGGATGTTACTTTCAACGTTGACGACTTTTTCAACTTCTCTGCAGAATCCAGTGGTTTAGATTGGCTGAACAAGTACTTGGAACTTGACAAGATTCCTGAGTGCACGAAAACATCTCAATAA 606 0.4224 MAPKIINNGTGKRSAINRGSWTPEEDRKLAQCIETHGAKRWKTVALKSGLKRCGKSCRLRWLNYLRPNIKRGNISDEEEDLILRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKLNKKEERPESSTTQEITGQNLNAGHNNPAMSENEVATNESGTLDVTFNVDDFFNFSAESSGLDWLNKYLELDKIPECTKTSQ 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04279 201 CDD SANT 20 65 IPR001005 -
Spst3g04279 201 SUPERFAMILY Homeodomain-like 16 112 IPR009057 -
Spst3g04279 201 Gene3D - 18 70 - -
Spst3g04279 201 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 120 IPR017930 -
Spst3g04279 201 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 13 141 - -
Spst3g04279 201 FunFam transcription repressor MYB5-like 75 142 - -
Spst3g04279 201 MobiDBLite consensus disorder prediction 122 157 - -
Spst3g04279 201 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Spst3g04279 201 Gene3D - 74 142 - -
Spst3g04279 201 CDD SANT 75 116 IPR001005 -
Spst3g04279 201 FunFam MYB-related transcription factor 17 70 - -
Spst3g04279 201 ProSiteProfiles Myb-like domain profile. 13 65 IPR001005 -
Spst3g04279 201 SMART sant 70 118 IPR001005 -
Spst3g04279 201 SMART sant 17 67 IPR001005 -
Spst3g04279 201 MobiDBLite consensus disorder prediction 131 157 - -
Spst3g04279 201 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 69 IPR017930 -
Spst3g04279 201 Pfam Myb-like DNA-binding domain 18 65 IPR001005 -
Spst3g04279 201 Pfam Myb-like DNA-binding domain 71 116 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04279 Spst-Chr3 94390109 94391981 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04279 13 129 MYB Transcription Factor Family AT5G52600 65.254 2.87e-52 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst3g04279 Myb_DNA-binding 5.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04279 K09422 - gmx:100799575 318.161