Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04276 ATGGACATGGAAGAATCAAGCCCTCTGGAAAGTGAACTTCAACCAACCACCTCAGCATCCTCTTTCTCCATTACTCACTCCTCCACCACCACCACCACCACCACCTCCTCCTCCTCCTCCTCCATAGACCAACGCCCCACTAACACTAAGGACAAGAAAAACAAGAGAACCGATACCAATCATGGAAACCACCCTACTTATAGAGGAGTGCGCATGCGCCAATGGGGCAAATGGGTATCCGAAATTAGAGAGCCAAGGAAGAAATCAAGAATTTGGCTTGGAACTTTTCCCACGCCGGACATGGCGGCTCGAGCCCACGACGTGGCGGCCCTCACCATCAAAGGCAGCTCGGCTTTCCTCAATTTCCCCGAATTAGCCGCCAAGATGCCCCGCCCCGCCACCAACTCACCCAAGGATATCCAGGTCGCGGCGGCTAAAGCGGCCGCCTTGGATTTCGGCCACCAAAGCCATGAAGCCGAGTCTGAGCTGAGTCGAGCCGGTTCCACCTCAAGCCTGACTCAATCTTCATCGTCGTCATCATCATCATCCAATTCTTCTTTCAACGGTGAGGATGATACATTCATGGACCTTCCTGATCTATCTCTTGACTTGAGCCATGGAACTGATGAGTTTCATTATTCCTCGGCTTGGCTTGTAGCCGGAGCCGAACTGGGTTTTCGGCTTGAGGAGCCTTTTCTTTGGGAATCATTTTAA 714 0.521 MDMEESSPLESELQPTTSASSFSITHSSTTTTTTTSSSSSSIDQRPTNTKDKKNKRTDTNHGNHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFPTPDMAARAHDVAALTIKGSSAFLNFPELAAKMPRPATNSPKDIQVAAAKAAALDFGHQSHEAESELSRAGSTSSLTQSSSSSSSSSNSSFNGEDDTFMDLPDLSLDLSHGTDEFHYSSAWLVAGAELGFRLEEPFLWESF 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04276 237 MobiDBLite consensus disorder prediction 9 45 - -
Spst3g04276 237 MobiDBLite consensus disorder prediction 154 190 - -
Spst3g04276 237 Gene3D AP2/ERF domain 66 124 IPR036955 GO:0003700|GO:0006355
Spst3g04276 237 MobiDBLite consensus disorder prediction 46 62 - -
Spst3g04276 237 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Spst3g04276 237 PRINTS Ethylene responsive element binding protein signature 89 105 IPR001471 GO:0003700|GO:0006355
Spst3g04276 237 ProSiteProfiles AP2/ERF domain profile. 66 123 IPR001471 GO:0003700|GO:0006355
Spst3g04276 237 Pfam AP2 domain 65 115 IPR001471 GO:0003700|GO:0006355
Spst3g04276 237 FunFam Ethylene-responsive transcription factor 2 65 124 - -
Spst3g04276 237 SMART rav1_2 66 129 IPR001471 GO:0003700|GO:0006355
Spst3g04276 237 MobiDBLite consensus disorder prediction 1 70 - -
Spst3g04276 237 SUPERFAMILY DNA-binding domain 66 124 IPR016177 GO:0003677
Spst3g04276 237 MobiDBLite consensus disorder prediction 162 190 - -
Spst3g04276 237 CDD AP2 67 125 IPR001471 GO:0003700|GO:0006355
Spst3g04276 237 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 44 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04276 Spst-Chr3 94340379 94341092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04276 55 233 AP2-EREBP Transcription Factor Family AT2G44940 50.971 1.85e-62 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst3g04276 AP2 9.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04276 - - vum:124847320 322.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04276 3 94340379 94341092 Spst3g04276 3 94340379 94341092 PCT