Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04272 ATGACCCGGCGTTGCTCGCATTGCAGCCACAATGGGCACAACTCCAGGACCTGCCCGAATCGCGGGGTTAAGCTGTTTGGAGTCCGATTAACTGACGGGTCGATCCGGAAGAGTGCTAGTATGGGTAATCTCACCCATTATGCGGGTTCCGGGTCCGGAACCCTCCATGCCGGGTCAACCAACCCGGGTTCTCCTGGTGAAACCCCCGATCACGGCACCGCCGCCGACGGTTACGCCTCCGAGGACTTCGTTCCCGGCTCTTCTTCTAGCTCCCGTGAAAGAAAGAAGGGTGTTCCGTGGACTGAGGAGGAGCATAGAATGTTTTTACTCGGATTGCAGAAGCTGGGCAAAGGTGATTGGCGTGGAATTGCAAGGAACTATGTTATATCAAGGACACCAACACAAGTGGCCAGTCATGCCCAAAAATACTTTATCAGGCAAAGCAATGTTTCCAGGCGGAAAAGACGGTCCAGCTTGTTTGATATTGTTGCAGATGAAGCAGCTGACACTCCAATGGTGCAGCAAGACTTCTTGTCAGCCAATCAGTTACCTGCTGAAACAGAAGGCAATAACCCTTTGCCCGCTCCTCCTCCCCTCGATGAAGAGTGTGAATCCATGGATTCCACAAACTCAAATGATGGAGAGCCTGCCCCATCAAAGCCTGAAAACACACAATCATCTTATCCAGTATTATATCCTGCATACTATTCTCCAGTGTTCCCGTTTCCTCTGCCCTATTGGTCGGGATACAGTCCAGAGCCCACCAAGAAGGAGACACATGAAGTGCTGAAGCCAACTGCAGTACATTCTAAAAGCCCAATCAATGTTGATGAACTGGTTGGCATATCAAAACTGAGTTTAGGGGAGTCTATTGGTGATTCTGGTCCCTCCTCCCTGTCTCTAAAACTTCTTGAAGAAGGACCCTCAAGACAGTCAGCTTTCCATGCAACACCGACATGTGGCAGCTCAAATATGAATGGCAGTGCCATCCATGCAGTTTAA 1002 0.502 MTRRCSHCSHNGHNSRTCPNRGVKLFGVRLTDGSIRKSASMGNLTHYAGSGSGTLHAGSTNPGSPGETPDHGTAADGYASEDFVPGSSSSSRERKKGVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVISRTPTQVASHAQKYFIRQSNVSRRKRRSSLFDIVADEAADTPMVQQDFLSANQLPAETEGNNPLPAPPPLDEECESMDSTNSNDGEPAPSKPENTQSSYPVLYPAYYSPVFPFPLPYWSGYSPEPTKKETHEVLKPTAVHSKSPINVDELVGISKLSLGESIGDSGPSSLSLKLLEEGPSRQSAFHATPTCGSSNMNGSAIHAV 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04272 333 SMART sant 96 146 IPR001005 -
Spst3g04272 333 Pfam Myb-like DNA-binding domain 99 144 IPR001005 -
Spst3g04272 333 NCBIfam myb-like DNA-binding domain, SHAQKYF class 95 147 IPR006447 GO:0003677
Spst3g04272 333 FunFam transcription factor MYB1R1 98 149 - -
Spst3g04272 333 ProSiteProfiles SANT domain profile. 100 148 IPR017884 -
Spst3g04272 333 MobiDBLite consensus disorder prediction 46 67 - -
Spst3g04272 333 MobiDBLite consensus disorder prediction 209 225 - -
Spst3g04272 333 ProSiteProfiles Myb-like domain profile. 92 144 IPR001005 -
Spst3g04272 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 92 148 IPR017930 -
Spst3g04272 333 MobiDBLite consensus disorder prediction 1 21 - -
Spst3g04272 333 MobiDBLite consensus disorder prediction 46 101 - -
Spst3g04272 333 MobiDBLite consensus disorder prediction 184 225 - -
Spst3g04272 333 CDD SANT 99 144 IPR001005 -
Spst3g04272 333 SUPERFAMILY Homeodomain-like 94 149 IPR009057 -
Spst3g04272 333 PANTHER TRANSCRIPTION FACTOR KUA1 3 271 - -
Spst3g04272 333 Gene3D - 98 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04272 Spst-Chr3 94308104 94313075 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Spst3g04272 Myb_DNA-binding 1.2e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04272 - - ccaj:109807943 651.358