Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04269 ATGAAGACTTTACTTCAAGATTCAAAAGGAAAAGGTGAACTCACACGTGCCATGCCCAGAGGGGGTGATGGAAGAAAAGAAAAAAAGTTAGGGAAAGCGACGTTGTTGGCTGGGGGGAAGACCCTCGTGGTGATCGCATGGGTGGAGATTTGGATGATGCTCATCATGCCTGTTCCTACTTCTGACATTTTTACCTCAGCCGTTGATGTAGGAACTGATTCACTCCTCGCCCAAATCTTCAGCCTTGTTAGGAAAACTTTAGAAAAGCAAAACCAGTCTCGTCACCCAAAAAAATGTGACATGAACGACGATGTGATGTATATAGTTATCCGGTCAATGGAATTGTTTGTGTTGTGGAGCGGGACTTATCCAGTGGTGCAAAGCAAAGATGACGTGAAAGTTATCCAAAAAGATGAGAGTGTGAAGCAGGGTTGTATTATTTTGGGGGCAAATGTCATGATTGAGATAACTGGCCTTGCTGACATAAAGTCATCATTGAACTTACACACCACTCCCACCCATTCTCTCTCCTTTCTATATAATCTCAACCCACACGGCCCCCCTTACCACTCCAACACTCCCTGCTTTTCATCCCCTTCTTACTCTATCTCTCTCTCTCCTCCTTATTCCCGACCTCAAACTCAATCCCTCGTTACCCAACTTCTTCACACGCTAATTTTTATAAAGCTAGAGATGATGGTCCAAAAGGAAGATCTGGGTTTGAGTTTAAGCCTCAACTTCCGTCACAACATCCCACATCCTCAACATCTCACTCTCATGTCTTCCTCTACTCATTCATCTTCCCCTTCTGCTTCCAATCCTCTTAAACCCTCTTGGAACGAGGCTTTCGCTTCTTCGGATCGAAACTCGGACACATGCAGAGGCGAAACCCGATCTTTCCTGCGTGGAATCGACGTGAATCGGTCACCTTCGGCCGTGGACATGGAAGAGGAAGCGGGAGTTTCTTCTCCGAACAGCACCGTTTCGAGCGTGAGCGGGAAACGAAGCGAGCGAGAACCCAACGGAGAAGAACACGACATGAACAGAGCCTGTTCACGCGGAATCAGCGACGAAGAAGACGGTGAAACATCAAGGAAAAAACTCAGACTCTCCAAAGACCAATCAGCTATTCTCGAAGAAAGCTTCAAAGAACACAATACCCTCAACCCCAAGCAAAAGTTGACACTGGCAAAACAGCTAGGCCTTCTACCAAGACAAGTTGAGGTCTGGTTCCAGAACCGAAGGGCAAGGACTAAGCTGAAGCAAACCGAGGTGGACTGCGAGGTGTTGAAAAGGTGCTGCGAGAATCTGACGGAGGAAAATAGAAGGTTGCAGAAGGAAGTTCAGGAGCTTAGAGCACTCAAACTTTCCCCTCAGTTTTACATGCAAATGACCCCACCCACCACACTCACTATGTGCCCTTCTTGCGAGCGCGTGGCTGTTCCCTCCTCCGCCGTTGATGGCGCCACGCGTCACCATCCCATGGCACAGGCCCAAGCCCACAATCGGGCCATACCCATTGGGCCGTGGGGTTCTGCAGGTCCCGTTCCACACCGGGCTTTCGATGGTTTCCACCACTGA 1581 0.4877 MKTLLQDSKGKGELTRAMPRGGDGRKEKKLGKATLLAGGKTLVVIAWVEIWMMLIMPVPTSDIFTSAVDVGTDSLLAQIFSLVRKTLEKQNQSRHPKKCDMNDDVMYIVIRSMELFVLWSGTYPVVQSKDDVKVIQKDESVKQGCIILGANVMIEITGLADIKSSLNLHTTPTHSLSFLYNLNPHGPPYHSNTPCFSSPSYSISLSPPYSRPQTQSLVTQLLHTLIFIKLEMMVQKEDLGLSLSLNFRHNIPHPQHLTLMSSSTHSSSPSASNPLKPSWNEAFASSDRNSDTCRGETRSFLRGIDVNRSPSAVDMEEEAGVSSPNSTVSSVSGKRSEREPNGEEHDMNRACSRGISDEEDGETSRKKLRLSKDQSAILEESFKEHNTLNPKQKLTLAKQLGLLPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPSSAVDGATRHHPMAQAQAHNRAIPIGPWGSAGPVPHRAFDGFHH 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04269 526 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 278 499 - -
Spst3g04269 526 CDD bZIP 414 453 - -
Spst3g04269 526 MobiDBLite consensus disorder prediction 336 370 - -
Spst3g04269 526 PRINTS Lambda-repressor HTH signature 392 401 IPR000047 GO:0003677
Spst3g04269 526 PRINTS Lambda-repressor HTH signature 401 417 IPR000047 GO:0003677
Spst3g04269 526 Gene3D - 369 419 - -
Spst3g04269 526 ProSiteProfiles 'Homeobox' domain profile. 361 421 IPR001356 GO:0003677
Spst3g04269 526 SMART halz 421 464 IPR003106 GO:0006355|GO:0043565
Spst3g04269 526 ProSitePatterns 'Homeobox' domain signature. 396 419 IPR017970 GO:0000981|GO:0006355
Spst3g04269 526 MobiDBLite consensus disorder prediction 309 370 - -
Spst3g04269 526 Pfam HD-ZIP protein N terminus 233 339 IPR006712 GO:0005634
Spst3g04269 526 Pfam Homeobox associated leucine zipper 421 455 IPR003106 GO:0006355|GO:0043565
Spst3g04269 526 MobiDBLite consensus disorder prediction 1 26 - -
Spst3g04269 526 MobiDBLite consensus disorder prediction 258 290 - -
Spst3g04269 526 Pfam Homeodomain 365 419 IPR001356 GO:0003677
Spst3g04269 526 CDD homeodomain 365 422 IPR001356 GO:0003677
Spst3g04269 526 SUPERFAMILY Homeodomain-like 353 422 IPR009057 -
Spst3g04269 526 SMART HOX_1 363 425 IPR001356 GO:0003677
Spst3g04269 526 FunFam Homeobox-leucine zipper protein HAT22 369 415 - -
Spst3g04269 526 Coils Coil 420 457 - -
Spst3g04269 526 MobiDBLite consensus disorder prediction 320 335 - -
Spst3g04269 526 MobiDBLite consensus disorder prediction 258 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04269 Spst-Chr3 94217772 94223284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04269 232 518 Homeobox Transcription Factor Family AT4G16780 62.671 1.29e-107 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Spst3g04269 HD-ZIP_N 1.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04269 K09338 - gmx:100813367 501.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04269 3 94217772 94223284 Spst3g04269 3 94217772 94223284 PCT