Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04262 ATGGCGAACCCAGCTGAAGTTTCAGCTTTGAATCGCATCAAGCTGCATCTTTTAGGTGAACTCTCTCCACTGGGCACTCCCCAAAATAGACAACCTTGCTTCGAATTTGACGAAACAAACCCTAGCCCTTCTCAATCTTCTACCTCTGACTCTTCCATGTCGTTGAATCACTACTTCACTGAGCTCCTCGAACCTGAGATTCAAGTCCCCGTCTTCGAGTTCGACTCCAAACCTCAAATAATCGACCTCGAGACCCCGAGGCCCCTGACATCGGTTGAGAAGAAACCTCAAACGAATCGCAAACCGTCGCTGCAGATCTCTCTCCCGAAGAAGACTGAGTGGATCCAATTCGGGAACCCGGATCCTAACCCGAAGATGGTCTGGCCGGAGAGCCAGCCGGAGAAGAAGCACTACAGAGGAGTCCGGCAACGGCCATGGGGGAAGTTCGCCGCCGAGATCCGCGACCCAAGCAAGCGCGGGTCAAGAGTTTGGCTTGGAACCTTCGACACTGCCATCGATGCCGCCAAGGCCTACGACCGCGCCGCCTTCAGGCTCCGCGGTTCCAAAGCCATCCTCAACTTTCCACTTGAAGTAGTCTCGGCGGCGGAGAACACCGACGCCGAAGGCGAGAGGAAGCGGCGGCGCGAGGAGGAGGTGGAGGAAGTAAAGACGGTGGTGAAGAAGGAGAAAACAACGGAACAGGAGGTGAACTGTTTTAGAGAGACGCCGTTAACGCCGTCTATGTGGACTGGGTTCTGGGATAGTGATGTGAAGGAGATTTTCAACGTTCCGCCGTTGTCGCCGTTATCTCCTCTTCCGGCTTTTGCATTTTCACCACTCATGGTTGTGTGA 852 0.5434 MANPAEVSALNRIKLHLLGELSPLGTPQNRQPCFEFDETNPSPSQSSTSDSSMSLNHYFTELLEPEIQVPVFEFDSKPQIIDLETPRPLTSVEKKPQTNRKPSLQISLPKKTEWIQFGNPDPNPKMVWPESQPEKKHYRGVRQRPWGKFAAEIRDPSKRGSRVWLGTFDTAIDAAKAYDRAAFRLRGSKAILNFPLEVVSAAENTDAEGERKRRREEEVEEVKTVVKKEKTTEQEVNCFRETPLTPSMWTGFWDSDVKEIFNVPPLSPLSPLPAFAFSPLMVV 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04262 283 Gene3D AP2/ERF domain 136 197 IPR036955 GO:0003700|GO:0006355
Spst3g04262 283 CDD AP2 136 195 IPR001471 GO:0003700|GO:0006355
Spst3g04262 283 PRINTS Ethylene responsive element binding protein signature 138 149 IPR001471 GO:0003700|GO:0006355
Spst3g04262 283 PRINTS Ethylene responsive element binding protein signature 177 197 IPR001471 GO:0003700|GO:0006355
Spst3g04262 283 SUPERFAMILY DNA-binding domain 137 197 IPR016177 GO:0003677
Spst3g04262 283 MobiDBLite consensus disorder prediction 24 52 - -
Spst3g04262 283 Pfam AP2 domain 137 187 IPR001471 GO:0003700|GO:0006355
Spst3g04262 283 ProSiteProfiles AP2/ERF domain profile. 137 195 IPR001471 GO:0003700|GO:0006355
Spst3g04262 283 PANTHER DNA-BINDING DOMAIN 101 222 IPR044808 GO:0003700|GO:0009873
Spst3g04262 283 FunFam Ethylene-responsive transcription factor 2 136 197 - -
Spst3g04262 283 MobiDBLite consensus disorder prediction 22 52 - -
Spst3g04262 283 SMART rav1_2 137 201 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04262 Spst-Chr3 94146982 94147833 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04262 1 283 AP2-EREBP Transcription Factor Family AT5G47230 48.355 3.65e-70 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst3g04262 AP2 5.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04262 K09286 - gmx:100800453 366.696