Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04254 ATGGATTTGATTGCAAGAGGTGGACACGATGGTGGAAACACAATATCATACCCTCAAAGAGAAATGGAAACTGTCTTGGTAGACCTTGCTGTGGATTTGAATGCAAGACATGGACAAGGTTGTGGACAAGGTGAAACCCCAACAACATTGGGCACTTTAAGAGCAATGGAAACTAAAATGATAGTCTCAAGTGAGGATTTCACTGCTGGAAGCACCACATTAAGCACTCCAAGGGCAATGGAGACAATAAATGTTGAGTCAAGTGGAGGCTTGAATGCAAGACATGGACAAAGTTGTGGACAAGATGAAACCACAACATTAGGCACTCCAAGAGCAATAGAGACTAAAATGATAGTCTCAAGTGAGGATTTCACAGCTAGAAACACCAAATTTAGCACTTCACGAGCAATGGAGATTGTGGATGTTGAGTCAAGTGGAAGCTTGCATGCAAGACATGGGCAGGGTTGTGGACAAGATGAAATTGCAACATTAGGCACTACAAGAGCAATAGAGACTAAAATGATAGTCTTGAGTGAGAATTTGACTGTTGGAAACACCTCATTAAGCACTCCAAGAGCAATAGATACTATAAATATTGAGTCAAGTGGGGACTTGATTTCTGGAAAGACAACATTAGGCACTACAAGAGATATAGAGACTAAAATGATAGTCTCAAGTGAGGATTTGACTATTGGAAAGACCTCATTAAGCACTCCAAGAACAATCGAGACTATAAATGTTGAGTCAAGTGGGGACTTGATTGCTGGAAAGACAACATCATGCATCACTCAAAGAGCAACGGAGATAGAATTGGTGGATGCTGGTGGAGATTCAATTGCAGAACAAAAACAGGATCGTGGACAAGGCAACAAGACAAAATTCAGCATTTCAAGGGAAAGGGAGACGGAAACAGTGGTCTGTAGTGTTGATTTGATGGGAAGACGTGAACAAATCTCTAGAACAGGTGGAAATGTAACATCAGAAGCAATGAAGAATAAAGTAGCAGTGACAAATGAGGAGTCAGTTGCTAGATATAGAAGGGTTTATGGACGATGTGTAGTAGAAACAGGTCCATCATCATCTGAAGGAAAAGCAACAGACAAGAAAAGAGATTTGTCTGTTCCTGAAAGAGTAAGTTCATCTAAACGAGGTGCAAGAAGAGGCATACAGGGTACATGGAACCAACCTACTCAGAAGAGGGCGAGAATTGGAGAACAAAATAGGGATATTTGTAAGCCTGGACCAAGATCACTAATGGAAGAAGGTCCATCATCACCTGAAAGACAAACGGCAAACAAGAAAAGGGGTTCACCTTTGCTCGAAAGAGAAAGGTCATTCAAACGGGGCACAAAAAGGGACATGCAGGGTACATCAAGCCAACCTACTAAGAGGGTGAAAATAGGAGAACAAAACAAAGAAATTAGTAATCTTGGACGAAGCTCAATAATGGAAAATGGTCTATCATCACCTGAAAGACAAACAGCAAACAGGAAAAGAGGTTCACCTTCATCTGAAAGAGTAAGGCCATGTAAGAAAACGACCCTTTCATGGTTGATAGACTCTAAGAGTATTAATGAAGACGAACGAGTATGCTATAAGAGTGCCACAATGAAAAAGGCAATAGCAGGAAGAATTAATAGGGGTAGAATTCTCTGCAGCTGTTGCCAGGAGGAGATATCTGTGTGGACCTTTGAGAGGCATGCTGGAAGTGATGTTGGACGGCCCTATGAACATATTTATCTTCGCAGAAAGCGCAAATCCCTCCAGAAATGCCTGATTGATGTTTGGCAACATGCCCGGGAACGTAAACGTCGGTGTATGTTTTTGTATGTGCCAAAAGAAACTGATGCAGACCAAAATGATGATGTTTGTTCAGTCTGTGGCGATGGGGGAGACTTAATCTGTTGTGACAAGTGTCCTTCCACGTATCATCTATCTTGCATAAATATAGAGCTGGTTTCTCAAAATGATTGGTTTTGTCCATATTGTGTATGCAAACACTGTGGACTGGTTGTGGACCTGGTTGTTGAGAAAAAGAAATACTATGAGAAAAAAGAGGGCTTCAAGTGCTCTCAATGTGACAAGAAGTGTCATTGGGAGTGCTTTGAAAAATTTGAAAAAGAATTCTCAAAACAAACTGTGGATCTTAAACCTTCAAGATCATATTGTGGGCCGGGCTGCCAAGAGATATATGAGAAAATGAGAGTATCACTCGGCATCAGAAATGATTATTCGGCAAAATACTCTTGGAGGGTCATCCGCCTAATGGAGACATTCAAGAAGGATCCTGCTGAAATGCATCTATACGTGGAAAACAATTCAAAGGTTGCAGTTACATGGATGTTAATGAATGAAGCTTTTGAGACAATAATTGACAGAAAGACGGGCATCAATGTGGTTCAAAGTGTAGTTTATAGCTGCAAGTCAAACTTAACCAGGATTGATTTTAGCCGTTTTTATATGTTTGTTCTGGAGGAAGATGATGAGATCATTGCTGCAGCTTGTATAAGATTTCACGGGACAAGGATTGCAGAAATGCCATTTATTGCTACAGAAACGTCATACAGGGGGCAAGGAGTTTGCCGGGAATTAATGAGGGTGATTGAATCGTTCCTATGCAATCTTAAAGTCCAAAATTTGATAATTCCATCTGCTGTGGAGACTTCTGATATGTGGAAGCGCAAGTACAACTTTACTGAGTTGAGTCAAGAGCTGAAGAAAGAAATATCCTCCTATAAAATTTTGATGTTCCCATGTGCTTTAAGACTCTACAAGGACTTGTCAACAAGCATAGCAGACATTAAGAATGACCAGGTGACTTCTAGACTTGAACATGGACCCTCATCAGGAATATTAGTAGAAGAAAAAGAGTAG 2874 0.4071 MDLIARGGHDGGNTISYPQREMETVLVDLAVDLNARHGQGCGQGETPTTLGTLRAMETKMIVSSEDFTAGSTTLSTPRAMETINVESSGGLNARHGQSCGQDETTTLGTPRAIETKMIVSSEDFTARNTKFSTSRAMEIVDVESSGSLHARHGQGCGQDEIATLGTTRAIETKMIVLSENLTVGNTSLSTPRAIDTINIESSGDLISGKTTLGTTRDIETKMIVSSEDLTIGKTSLSTPRTIETINVESSGDLIAGKTTSCITQRATEIELVDAGGDSIAEQKQDRGQGNKTKFSISRERETETVVCSVDLMGRREQISRTGGNVTSEAMKNKVAVTNEESVARYRRVYGRCVVETGPSSSEGKATDKKRDLSVPERVSSSKRGARRGIQGTWNQPTQKRARIGEQNRDICKPGPRSLMEEGPSSPERQTANKKRGSPLLERERSFKRGTKRDMQGTSSQPTKRVKIGEQNKEISNLGRSSIMENGLSSPERQTANRKRGSPSSERVRPCKKTTLSWLIDSKSINEDERVCYKSATMKKAIAGRINRGRILCSCCQEEISVWTFERHAGSDVGRPYEHIYLRRKRKSLQKCLIDVWQHARERKRRCMFLYVPKETDADQNDDVCSVCGDGGDLICCDKCPSTYHLSCINIELVSQNDWFCPYCVCKHCGLVVDLVVEKKKYYEKKEGFKCSQCDKKCHWECFEKFEKEFSKQTVDLKPSRSYCGPGCQEIYEKMRVSLGIRNDYSAKYSWRVIRLMETFKKDPAEMHLYVENNSKVAVTWMLMNEAFETIIDRKTGINVVQSVVYSCKSNLTRIDFSRFYMFVLEEDDEIIAAACIRFHGTRIAEMPFIATETSYRGQGVCRELMRVIESFLCNLKVQNLIIPSAVETSDMWKRKYNFTELSQELKKEISSYKILMFPCALRLYKDLSTSIADIKNDQVTSRLEHGPSSGILVEEKE 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04254 957 CDD PHD2_CHD_II 623 663 - -
Spst3g04254 957 PANTHER PHD FINGER PROTEIN 12 367 939 IPR042163 GO:0003714|GO:0045892
Spst3g04254 957 Pfam PHD-finger 623 665 IPR019787 -
Spst3g04254 957 SMART PHD_3 623 664 IPR001965 -
Spst3g04254 957 CDD NAT_SF 821 882 - -
Spst3g04254 957 MobiDBLite consensus disorder prediction 473 497 - -
Spst3g04254 957 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 781 928 IPR000182 GO:0016747
Spst3g04254 957 Gene3D - 782 915 - -
Spst3g04254 957 ProSiteProfiles Zinc finger PHD-type profile. 621 666 IPR019787 -
Spst3g04254 957 MobiDBLite consensus disorder prediction 355 508 - -
Spst3g04254 957 SUPERFAMILY FYVE/PHD zinc finger 613 670 IPR011011 -
Spst3g04254 957 MobiDBLite consensus disorder prediction 385 401 - -
Spst3g04254 957 MobiDBLite consensus disorder prediction 434 451 - -
Spst3g04254 957 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 611 715 IPR013083 -
Spst3g04254 957 MobiDBLite consensus disorder prediction 362 383 - -
Spst3g04254 957 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 805 882 IPR016181 -
Spst3g04254 957 Pfam Tify domain binding domain 543 593 IPR032308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04254 Spst-Chr3 94058877 94062883 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04254 502 927 PHD Transcription Factor Family AT4G14920 40.654 5.16e-98 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Spst3g04254 TDBD 1.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04254 - - pvu:PHAVU_009G190800g 1211.05