Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04247 ATGGGCAAGCAAGGTCCTTGCTATCACTGTGGAGTTACAAGCACACCACTTTGGCGTAATGGGCCACCTGAGAAGCCTGTACTATGCAATGCATGTGGATCTCGATGGAGGACTAAGGGAACACTAGCAAATTATACCCCTTTGCATGCACGGGCAGAAAATGTTGATTATGAGGATCAAAAGGTTTCCAGGGTAAAAAGCATATCATTAATTAAGAACAAAGAAGTGAAATTGGTCAAGCTAAAGCAGAACTATGATAATGCTGCATCTGGAGGGTTTGTTCCAGAATATAATCAAGGACACCGAAAGGTAGTGGATGAAGATACAAGCAATAGATCAAGCTCAGGGTCAGCTGTCTCTAACTCGGAGAGCTGTGCTCAATTTGGTGGCACAGATGCTAGTGATTTGACAGGTCCTGCTCAGTCAGTGGTCTGGGATGCCATGGTTCCTTCAAAAAAGAGGACATGTTCAGGTCGTCCAAAGCCTTCATCTGTCGAGAAGCTCACAAGAGACCTGTGTACTATTCTTCATGAACAGCAGTCGTATTTTTCTGCATCTTCTGAAGAGGATCTTCTTTTTGAAAGTGATACACCAATGGTCTCTGTTGAGATAGGACATGGTAGCATTCTCATAAGGCATCCTAGCTCCATAGCTCGCGATGAAGAGTCTGAGGCTAGCTCTCTTTCAGTTGATAATAAACAATGCCTAATGCGTGAAGCATATTCATGCTCTAGTACGATTCCTTTGTATAGTGATAACAGTGCCATGAACTTCTCATCTCATGGAGTTGAAAAGATCAAAAACTCAGCTGGCCAAATCATGCAACAAGTGAAACTTAATAGGGACAAGTCTCAGCTTGAAAAACTACAAGGTCCTGGAAATCACAATTCTCCGCTGTGCTCAATAGATTTAAATGTTATAGTGAACTATGAGGAGTTTATGAGAAATTTGACAAATGAAGAGCAGCAGCAATTACTGAAGTATCTCCCTGTGGTTGATACCGCCAAATTTCCTGATAGCCTTAAAAACATGTTCAGTAACTTCCAATTCAAGGAGAACTTGACTTATTTTCAGCAACTTCTTGGGGAAGGTGTCTTTGACATATCTTTGTTGGGGACAAAACCTGAAGAGTGGAAGACTTTGAAAAGGCTTGTGTTATCTAATCTGTCAAAATCAAAATGGGTTGAACACTATAATTTTCTCAAGAAATGTGAAAACAAAGCTGGGAAAACTGTTGGTCCTGGATCTACTGCTATGGAATCAAGTAATGTTACAAATGCCAAGAGAATGCGTGAGGATGACAGCAAAAATCAAAATTTTCCAGAATTGAAGGCAACAATGAGAAGCCCCAAAAGGATGGTCATAAAGCCTATCTGTGAGGGCAAAGAAGTTGTAGAAGAAGGCTCAAGCTTCAGTCCAAAAAGCCTATTTGCTTTGCCCCGTAGTATTGGTGGCTTGCACATGCTGGATTCTTTTAACTATGTTGGTGAGAGTTCTGAGGATCTGCTGTTAGAGGTGCCTTCTAACAGTTCTTTTCCACAGGCAGAGCTCCTGCTCCCAACTTTAAGCTATGGTGCGCAGGTCAGCACCACTAGTAGCTCTGTACACTCACCTGTTACTCATCCTTAG 1629 0.4199 MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAENVDYEDQKVSRVKSISLIKNKEVKLVKLKQNYDNAASGGFVPEYNQGHRKVVDEDTSNRSSSGSAVSNSESCAQFGGTDASDLTGPAQSVVWDAMVPSKKRTCSGRPKPSSVEKLTRDLCTILHEQQSYFSASSEEDLLFESDTPMVSVEIGHGSILIRHPSSIARDEESEASSLSVDNKQCLMREAYSCSSTIPLYSDNSAMNFSSHGVEKIKNSAGQIMQQVKLNRDKSQLEKLQGPGNHNSPLCSIDLNVIVNYEEFMRNLTNEEQQQLLKYLPVVDTAKFPDSLKNMFSNFQFKENLTYFQQLLGEGVFDISLLGTKPEEWKTLKRLVLSNLSKSKWVEHYNFLKKCENKAGKTVGPGSTAMESSNVTNAKRMREDDSKNQNFPELKATMRSPKRMVIKPICEGKEVVEEGSSFSPKSLFALPRSIGGLHMLDSFNYVGESSEDLLLEVPSNSSFPQAELLLPTLSYGAQVSTTSSSVHSPVTHP 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04247 542 Pfam Asx homology domain 294 376 IPR028020 -
Spst3g04247 542 SMART GATA_3 1 53 IPR000679 GO:0006355|GO:0043565
Spst3g04247 542 MobiDBLite consensus disorder prediction 110 132 - -
Spst3g04247 542 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Spst3g04247 542 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 46 - -
Spst3g04247 542 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 295 407 IPR044867 -
Spst3g04247 542 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Spst3g04247 542 PANTHER OSJNBB0038F03.10 PROTEIN 1 524 IPR044589 -
Spst3g04247 542 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Spst3g04247 542 Gene3D - 3 68 IPR013088 GO:0006355|GO:0008270
Spst3g04247 542 CDD ZnF_GATA 6 55 IPR000679 GO:0006355|GO:0043565
Spst3g04247 542 MobiDBLite consensus disorder prediction 411 436 - -
Spst3g04247 542 MobiDBLite consensus disorder prediction 105 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04247 Spst-Chr3 93965017 93970242 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04247 1 518 C2C2-Gata Transcription Factor Family AT4G17570 50.926 2.44e-148 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Spst3g04247 ASXH 6.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04247 - - gmx:100799745 960.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04247 3 93965017 93970242 Spst3g04247 3 93965017 93970242 PCT