Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04244 ATGGAACTCGGTTTAAAGCACCAACTTGGTCTCGTTTGTGTGATACTGCTCTTTCCTGCATTGTGTAGCTGCTACGAATATGTTACAAACTCAAGAGCAACCTATTATAATACCCCTGGGGGCTATGGGAATCCTAGGGGAGCTTGTGGGTTTGGAGAATATGGAAGGACGATGAACAATGGCAGTGTTGCAGCCGTATCAGGGTTATGGCGCAACGGAGCTGGATGTGGAGTATACGTGGTGGCAACAGACTATGGCGCTGGAGACAGAACAGACTTCATAATGAGCAAACGTGGGTTCTCAGAATTGGGACGCAACGCAGGTGCTTCTGCCCAACTGTTAAAAGAAGGGGTAGTGGATATTGCATTCAAAAGGGTTCCCTGTAGATACCCTTCTAACATCAAGCTCCAAGTCCAGGAAAGCAGCAGAAACCCTGGCTACTTTGCTGTTTTGCTTCTCAACGTAAATGGAATAAACGACATCACTGCTGTTGAGATGTGGCAGAGAGGGGAGAAACGATGGGAGGCACTGCGAAGGGCCTATGGAGCAGTGTTTGACTTTGCTAACCCACCAAGTGGTGAAATCCTCTTAAGGTTTCAAGTTGGCTATAAATATTGGCTTCTTCCCAAGATCTCTATTCCTGCTAATTGGAAGCCTGGAGTTACTTATGACTCCAAAAATAATGGGGTTGTGTAG 696 0.4655 MELGLKHQLGLVCVILLFPALCSCYEYVTNSRATYYNTPGGYGNPRGACGFGEYGRTMNNGSVAAVSGLWRNGAGCGVYVVATDYGAGDRTDFIMSKRGFSELGRNAGASAQLLKEGVVDIAFKRVPCRYPSNIKLQVQESSRNPGYFAVLLLNVNGINDITAVEMWQRGEKRWEALRRAYGAVFDFANPPSGEILLRFQVGYKYWLLPKISIPANWKPGVTYDSKNNGVV 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04244 231 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Spst3g04244 231 PANTHER EXPANSIN-B3 18 226 - -
Spst3g04244 231 SUPERFAMILY Barwin-like endoglucanases 13 132 IPR036908 -
Spst3g04244 231 SUPERFAMILY PHL pollen allergen 133 225 IPR036749 -
Spst3g04244 231 Gene3D - 79 128 IPR036908 -
Spst3g04244 231 Gene3D - 21 78 IPR036908 -
Spst3g04244 231 Pfam Expansin C-terminal domain 134 207 IPR007117 -
Spst3g04244 231 Gene3D - 129 226 IPR036749 -
Spst3g04244 231 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 146 225 IPR007117 -
Spst3g04244 231 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 133 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04244 Spst-Chr3 93956300 93957805 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04244 5 225 Expansin Gene Family AT4G17030 46.154 6.01e-66 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04244 - - gmx:100776296 374.785